Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU261846 |
| length | 1468 |
| RNA type | TUCP |
| GC content | 0.42 |
| exon number | 3 |
| gene id | dynll2a |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047608.1 |
| NCBI id | CM018554.1 |
| chromosome length | 25848897 |
| location | 6021145 ~ 6024353 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU261757 | lncRNA | downstream | 150593 | 5870401 ~ 5870627 (-) | True | G221068 |
| TU261709 | lncRNA | downstream | 225767 | 5795128 ~ 5795453 (-) | True | G221026 |
| TU261600 | lncRNA | downstream | 421845 | 5588282 ~ 5599375 (-) | False | nectin3a |
| TU261547 | lncRNA | downstream | 517278 | 5503040 ~ 5503942 (-) | True | G220884 |
| TU261527 | lncRNA | downstream | 532212 | 5488775 ~ 5489008 (-) | True | G220864 |
| TU261950 | lncRNA | upstream | 67602 | 6091913 ~ 6092434 (-) | True | G221214 |
| TU261982 | lncRNA | upstream | 178753 | 6203064 ~ 6204930 (-) | True | G221245 |
| TU262213 | lncRNA | upstream | 301780 | 6326091 ~ 6416808 (-) | True | G221450 |
| TU262227 | lncRNA | upstream | 392571 | 6416882 ~ 6417625 (-) | True | G221461 |
| TU262210 | lncRNA | upstream | 489517 | 6513828 ~ 6514965 (-) | True | G221448 |
| XM_026924653.2 | mRNA | downstream | 17871 | 5989418 ~ 6003349 (-) | True | hnf1ba |
| XM_034310538.1 | mRNA | downstream | 45501 | 5939052 ~ 5975719 (-) | True | synrg |
| XM_026924051.2 | mRNA | downstream | 217247 | 5797928 ~ 5803973 (-) | True | LOC113532612 |
| XM_026924574.2 | mRNA | downstream | 224245 | 5787013 ~ 5796975 (-) | False | rab34a |
| XM_026924575.2 | mRNA | downstream | 224470 | 5787013 ~ 5796750 (-) | False | rab34a |
| XM_026924598.2 | mRNA | upstream | 1152 | 6025463 ~ 6028603 (-) | True | srsf1a |
| XM_026924004.2 | mRNA | upstream | 4935 | 6029246 ~ 6033511 (-) | True | aldoca |
| XM_026924005.2 | mRNA | upstream | 4935 | 6029246 ~ 6033451 (-) | False | aldoca |
| XM_034310502.1 | mRNA | upstream | 10762 | 6035073 ~ 6047606 (-) | False | rskra |
| XM_034310501.1 | mRNA | upstream | 10762 | 6035073 ~ 6047606 (-) | False | rskra |
| TU261738 | other | downstream | 217342 | 5797985 ~ 5803878 (-) | False | LOC113532612 |
| TU261666 | other | downstream | 310329 | 5710098 ~ 5710891 (-) | True | G220990 |
| TU260468 | other | downstream | 2204433 | 3740282 ~ 3816787 (-) | False | LOC113544484 |
| TU260466 | other | downstream | 2204433 | 3811560 ~ 3816787 (-) | False | LOC113544484 |
| TU260467 | other | downstream | 2204433 | 3811560 ~ 3816787 (-) | False | LOC113544484 |
| trnap-cgg_8 | other | upstream | 1171212 | 7195523 ~ 7195594 (-) | True | trnap-cgg_8 |
| XR_004579456.1 | other | upstream | 1368104 | 7392415 ~ 7463499 (-) | True | zgc:77784 |
| TU263800 | other | upstream | 2916707 | 8941018 ~ 8946899 (-) | True | G222809 |
| TU264952 | other | upstream | 4283749 | 10308060 ~ 10312487 (-) | False | LOC113533081 |
| XR_004579509.1 | other | upstream | 6916599 | 12940910 ~ 13007559 (-) | True | nf1a |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | TCONS_00017919 | True | 1383 | mRNA | 0.42 | 3 | NC_007126.7 | 16066091 ~ 16070731 (-) |
| grasscarp (Ctenopharyngodon idella) | TU155453 | True | 258 | lncRNA | 0.44 | 1 | CI01000026 | 15921932 ~ 15922189 (+) |
| grasscarp (Ctenopharyngodon idella) | TU256466 | True | 1394 | TUCP | 0.41 | 3 | CI01000053 | 2593227 ~ 2595467 (+) |
| eurasian perch (Perca fluviatilis) | TU30252 | True | 2140 | TUCP | 0.41 | 2 | NC_053113.1 | 37264573 ~ 37269320 (-) |
| tiger barb (Puntius tetrazona) | TU155453 | False | 1368 | TUCP | 0.43 | 3 | NC_056713.1 | 9793748 ~ 9796890 (-) |
| mexican tetra (Astyanax mexicanus) | TU7845 | True | 1816 | lncRNA | 0.45 | 3 | NC_035897.1 | 23335116 ~ 23339774 (+) |
