RNA id: XM_026923900.2


Basic Information

Item Value
RNA id XM_026923900.2
length 1585
RNA type mRNA
GC content 0.42
exon number 3
gene id dynll2a
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 6021145 ~ 6024353 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAAAACGCGCGCGCACCACACGGCGGAGGCGGAGAGCTGCAGCCAATGGAAAGCGCGCGCTGGAGAGCAGCGGAACCGAGCAGAGGAACCGAGCAGCGCTTCAGACTCTGTGTTTGAGTTCCTGTAGACACAAAGCTCATCCTGACAGGACGCGAGAAAAATACAAGCATCCAAACTCGGGCTGCTGTGAATATTTCtgcttcttattcttcttatttgCTAAGGACACCTGATCGACTGCAGCATTATGACTGACAGGAAAGCTGTGATCAAGAATGCTGACATGTCTGAGGACATGCAGCAGGATGCAGTTGACTGTGCAACACAGGCCATGGAGAAGTACAACATTGAGAAGGACATCGCAGCATACATCAAAAAGGAGTTTGACAAGAAGTACAACCCAACATGGCATTGCATTGTGGGAAGAAACTTTGGCAGCTATGTCACCCATGAGACGAAGCACTTCATCTACTTCTACTTGGGCCAGGTGGCCATCCTCCTGTTCAAATCCGGCTGATGTCTTACAGCGAGAGTAGAATGTTCTTTTCCAACATGGACCAAGATGCACTAGTGGCCAATGTCCTGTCTAACCACATGCTACAAATATTAAACAAGGCCATACCATGACTATGCTGACTGTGCGTAACTGCATGGGCCGTATACCATACTAATTGTGCATATGTTGAGGTTAAGTTGCTTTTCAGTAGGTGTCCCATGTTTATCGGGAGAGTTTTTGTTTCTGGTCCTGACGAGTTTGTTCGAGCATAGGAGCTGTGAAGGCAGGCGTGATGTTGATTAAATAAAGCAATTCAGATGAACTCCAAAAAGTGCatctgtattatttttcttctaagAGCTGTTTTGTTTAAGTAGTCTTTGCTGCCATGTAGTTCTAACGAGCACGGGGTGTGTCTGTACCGTGGTGGAGATggagaataaagaaaataagtCATGTTTATGTGGGTTCATCTAAGGTTAGGTGATTATTATTGTCGATTGTTTCATGTCATTGGTTTGGAGATGGTGCTTGTATGCTAGGGAACAGATGGGTTACAGATGCACAAATCACACTCTTATTCTGTGAAACTGCATTtcctttttgtttaaaatgtcttacaAGGTTACAAGTGCATTATGTCTGTTGGGGAATAATCTAAGATATATTAAACGAACTGCTTTTCCagctttattttgtgtttaatttcttCATTATGTCAGTTGCCGAACATAAAGGGACTCTGCACACAATATTCTCCAGCTCTTTCAGTCTGCTATTAAAGTTGGAATTATTTAGATGTTTAGCatttagcatgttttttttctctacatatGAGGTGTAGGTTTTTGTTACTTGTCTGTATTTGCTATTTCTGTATATTGCACATGACTTCAAGCCTCCCTCTATTGGTAGGCCTGTGAAACACTTGCACTCCATTTCACTGTACCCTCTCAGGTACTGCCCATGACAAAAAGCAGATCAGTCATTAACATGTGTAAATGTCCTCTGGGTTTTGTTTGCCTAAGTAATTTTGCTGTATTGTGTAATATCAATAAAGACTATAGTTGCACATTGGAGAAACAGGA

Function

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0005875 microtubule associated complex cellular_component
GO:0005634 nucleus cellular_component
GO:0043186 P granule cellular_component

KEGG:

id description
K10418 DYNLL; dynein light chain LC8-type

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261757 lncRNA downstream 150518 5870401 ~ 5870627 (-) True G221068
TU261709 lncRNA downstream 225692 5795128 ~ 5795453 (-) True G221026
TU261600 lncRNA downstream 421770 5588282 ~ 5599375 (-) False nectin3a
TU261547 lncRNA downstream 517203 5503040 ~ 5503942 (-) True G220884
TU261527 lncRNA downstream 532137 5488775 ~ 5489008 (-) True G220864
TU261950 lncRNA upstream 67560 6091913 ~ 6092434 (-) True G221214
TU261982 lncRNA upstream 178711 6203064 ~ 6204930 (-) True G221245
TU262213 lncRNA upstream 301738 6326091 ~ 6416808 (-) True G221450
TU262227 lncRNA upstream 392529 6416882 ~ 6417625 (-) True G221461
TU262210 lncRNA upstream 489475 6513828 ~ 6514965 (-) True G221448
XM_026924653.2 mRNA downstream 17796 5989418 ~ 6003349 (-) True hnf1ba
XM_034310538.1 mRNA downstream 45426 5939052 ~ 5975719 (-) True synrg
XM_026924051.2 mRNA downstream 217172 5797928 ~ 5803973 (-) True LOC113532612
XM_026924575.2 mRNA downstream 224395 5787013 ~ 5796750 (-) False rab34a
XM_026924598.2 mRNA upstream 1110 6025463 ~ 6028603 (-) True srsf1a
XM_026924004.2 mRNA upstream 4893 6029246 ~ 6033511 (-) True aldoca
XM_026924005.2 mRNA upstream 4893 6029246 ~ 6033451 (-) False aldoca
XM_034310502.1 mRNA upstream 10720 6035073 ~ 6047606 (-) False rskra
XM_034310501.1 mRNA upstream 10720 6035073 ~ 6047606 (-) False rskra
TU261738 other downstream 217267 5797985 ~ 5803878 (-) False LOC113532612
TU261666 other downstream 310254 5710098 ~ 5710891 (-) True G220990
TU260468 other downstream 2204358 3740282 ~ 3816787 (-) False LOC113544484
trnap-cgg_8 other upstream 1171170 7195523 ~ 7195594 (-) True trnap-cgg_8
XR_004579456.1 other upstream 1368062 7392415 ~ 7463499 (-) True zgc:77784
TU263800 other upstream 2916665 8941018 ~ 8946899 (-) True G222809
TU264952 other upstream 4283707 10308060 ~ 10312487 (-) False LOC113533081
XR_004579509.1 other upstream 6916557 12940910 ~ 13007559 (-) True nf1a

Expression Profile