RNA id: XM_026924450.2


Basic Information

Item Value
RNA id XM_026924450.2
length 3739
RNA type mRNA
GC content 0.39
exon number 20
gene id LOC113532805
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 6619172 ~ 6653418 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCAATTACAATACTGTGGTTGGAACTTAAATGGGCAGTTCATGCTGAAAAGCCCTCCACTGTGGCTGAATTGAAGCAattctgcaaagaagagtgggccaaaaatTCCTCCATAGTGATGTGAAGGACTGACTTCCAGTTAACAGAAGGGTTTGGTTGCAGTTGTAGCTGCTAAAGATGGTACTTTAAGGGGGCAATTGCTTTTTCACATGGGTGATACAGGGGTAGTATAACCTctttcaataaatgaaatgatcatttaaaaactgcattttgtgtttcttcatgTTCTCCTTTTctcatgttacatttttatgagGATGTGAAACCATTTAGTGTGActaatatgcaaaaatagagACAATCAGGgaaatactttttcacagcactgtaGTTACTTAACTGCCTCAGCAAGATGTTTGCAGCTGTGCTGTTTATAATTgGCATGTACACAGCAGTGGGATTCAACATATTCACAAAGCCAGTGAGCAAATTTACAAATGATGATCAAAGCAATATTCAATCAAAGGACAGagtTTTTGTTCCTTCTCCTACTTCTGGAGACGTTTTCAGATGCGCAGAGAAAAACTGTTCTAGAATAAATGTTGctgGAGTAACGAAAGGCCTGAGACCAGCTGTGTCTGTAACATCCAGTTGGCGTGAAGATAAGGAGCAGCTTCATGTTTGTAACCAAGTTCGGACAATTAATTCATCAACTGAGAATTTCAATGGAAACTGTACACACATATCTGATCATCAGGAAAAGAGTAAAATTTACCCCAATAAGTTGGTTTTACAGCTGCTGGAACAAAAAGCCATggacagcaacaacaacaataacaataaaaaccaaGGCAGTCAAACATCTCTTTATCGAGACCactggaggaagagaagagcTCTACAGAATGACCCTAGCACTGATacagatgaagaagatgaagATGCAGGGACGGAGATCACTTTTGTGCTGGATGGTTCTGGTAGCATTGAGCAGGAGGATTTTGAAAGGGCCAAAgactttatttataatgtgatgaaaaatgtttggaCAACATGTTTCAGTTGCAAGTTTGCAGTAGTGCAGTATGGGAGAGATATAAGGACAGAACTCTCTCTGAATGAAAACAATGAACGTCTTAGAGCCTTGGATAAGGTGAAGAACATAAAACAAATTCATGCAATCACCAAGACAGCTTCAGCCCTCTACCATGTCCTCACAGACGTTTTTGTTCCTCAAAGTGGATCAAAAGAGAACgccaaaaaaaagattattctACTGTCTGATGGAGAGATGGCGGGAGATGAAAGAAACCTCACAGAGGTATTGAACATGCCACAGATGGAGGGGATTGTTCGCTATGCTATAGGGGTGGGGCCAGAGGTTCTGAATAAAACACAGGCAATAAAAGAGATGACAGAAATAGCTGGCAGTGAAGATagatttttcagtgtttgtaaTTATGCTGCTTTGGAAAACATTCTCTCTTCTTTGGAAAAAAGCATAATTAGGATTGAAGATGCAGGGACGGAGATCACTTTTGTGCTGGACGGCTCTAGTAGCATTGACCCGCAGGATATTGAAAGTGCCAAAGACTTTATTAGTAAtgtgatgaaaaatgtttggaCAACTTGTTTCAGTTGCAAGTTTGCAGTAGTGCAGTATGGGAGAGACATAAGGACAGAACTCTCTCTGCAAGAAAATAATGACCATCTCAGAGCCTTGGATAAGGTGAAGAGCATAAAACAGATTTATGGGATCACAAAGACAGCTTCAGCCCTCTACCATGTTCTCACAGACATTTTTGTTCCTCAAAATGGATCAAAAGAGAACGccaaaaaaatgattattctACTGTCTGATGGAGAGATGGCAGGAGATGAAAGAAACCTCACAGAGGTATTGAACATGCGACAGATGGAGGGGATTGTTCGCTATGCTATAGGGCTCGGGCCAGAGGTTCTGAATAAACCACAGGCAATAAAAGAGATGATGGAAATAGCTAGCAGCGAAGATCGATTTTTCAAGGTTTCTAATTATGCTGAATTGAAAAACATTCTCTCTTCtttggaaaaaaacataattaggATTGAAGATGCAGGGACGGAGATCGCTTTTGTGCTGGACGGCTCTGGTAGCATTGAGCCGCCGGATTTTGAAAGGGCCAAAGACTTTATTAGTAATGTGATGAATAATGTTTGGACAACATGTTTCAGTTGCAAGTTTGCAGTAGTGCAGTATGGGAGAGACATAAGGACAGAACTCTCtttgaaagaaaataatgaacatctcAGAGCCTTGGATAAGGTGAAGAACATAAAACAAATTCATGCAATCACCAAGACAGCTTCAGCCCTCTACCATGTTCTCACAGACGTTTTTGTTCCTCAAAGTGGATCAAAAGAGAACgccaaaaaaaagattattctACTGTCTGATGGAGAGATGGCAGGAGATGAAAGAAACCTCACAGAGGTATTGAACATGCCACAGATGGAGGGGATTGTTCGCTATGCTATAGGGCTGGGGCCAGAGGTTCTGCTGAAAAGGAATGCAATACAAGAGATGATTGAGATAGCTGGTGGCGAAGAGAGATTCTTCAGGGTTTCCAGTTATGCTGCCTTGGAAGACATTCTCTCTACTTTGGAAAAAAGCATACTCAGGTCTGCAGGAAGGGGAATACAGCTATTCTGCCATTCCTAGGATTTTCAAAGGTCTGATGCTCAGCCAGCTGGAATTTTGGTTCCACCTGGCAGGGTGCATGGGAGCAACACTCCTGAGTCCAGCTGGATGTTGAGAGTAATGATAtgacatatatataaacagattaatcgTGAACAACAATAGTGAGCAACAGGATGCACATCAAAGTGATATTCAGTAATCCAATGACACATGTACAATGCAAATTCATTAAATCCTTTTTACTTTAAGCTAATACAACTCTGAATATAAATTGGGATTTATGATGATCTTGAATAACTATTAtgacaaagataaaaaaaaaaaaaaaaaaaagcagaacaagacatggctttgctaTAGAACTCTCAAGAGTTTTAGGTCAATTTTGGAAACATGCACGTCCGTGAGGCTCGACTGTCATGTCCAATACCAtcaatcacctcatcaaccatgccattttatttatcaccaaataactcctataaaatccatttatcataaggaaaaatattagCAAGGATATTAAAGTCAACCAAACTTAAAAACGGTACACTATTCtctaaaataatttgtggagacGGAACTTAAAATGGAAGTTTGGCTCAGTCTCCATTCATTAACATGGGAAGGGGTGGGGTtaaaattgtactgcagccagccactagacgGCCTCAGAAACTCAGAGACATTATGGCTTCACTTTTGACTCCCTGTTAAGACATCCACCCATATACACAGTCATTGCTTACAACTTATACGTAAGTATCAGAGGACAGGAATAGACCATCCTGCAGGTGAATATCCTCTCTCATTTTTTGAAAGACATTCACTTCTTAAGCCTATATGTAGACAAGAATATTATAAATTAGCTTATGAAGAAGTTATCTTGAATTATTAGTAATCAGTTATTTTGTTGTTGCCAAAGAATAGGCTACCTTATTAGACATTCTTTGTATTTGACTTTCTACTGATGTAGTACCACACGAGATGATTTCACTGCTTGATATTTTTAAGATATATTTgcattcaaataaacaaaattttgaTTCTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262210 lncRNA downstream 104207 6513828 ~ 6514965 (-) True G221448
TU262227 lncRNA downstream 201547 6416882 ~ 6417625 (-) True G221461
TU262213 lncRNA downstream 202364 6326091 ~ 6416808 (-) True G221450
TU261982 lncRNA downstream 414242 6203064 ~ 6204930 (-) True G221245
TU261950 lncRNA downstream 526738 6091913 ~ 6092434 (-) True G221214
TU262299 lncRNA upstream 2755 6639043 ~ 6639829 (-) False LOC113532805
TU262406 lncRNA upstream 51301 6687589 ~ 6688311 (-) True G221618
TU262435 lncRNA upstream 123122 6759410 ~ 6759618 (-) True G221638
TU262426 lncRNA upstream 124368 6760656 ~ 6761787 (-) True G221633
TU262458 lncRNA upstream 169867 6806155 ~ 6806367 (-) True G221659
XM_026924070.2 mRNA downstream 14108 6583963 ~ 6605064 (-) True LOC113532622
XM_026924891.2 mRNA downstream 39211 6558532 ~ 6579961 (-) True itgae.2
XM_026924405.2 mRNA downstream 64721 6536048 ~ 6554451 (-) True cul5a
XM_034310614.1 mRNA downstream 64958 6536048 ~ 6554214 (-) False cul5a
XM_034310615.1 mRNA downstream 65088 6536048 ~ 6554084 (-) False cul5a
XM_034310652.1 mRNA upstream 112628 6748916 ~ 6756266 (-) False tubd1
XM_026924352.2 mRNA upstream 112628 6748916 ~ 6755376 (-) True tubd1
XM_026924556.2 mRNA upstream 194946 6831234 ~ 6840971 (-) True LOC113532877
XM_026924088.2 mRNA upstream 246840 6883128 ~ 6888991 (-) True LOC113532633
XM_026924665.2 mRNA upstream 295234 6931522 ~ 6936069 (-) True atf5b
TU261846 other downstream 594861 6021220 ~ 6024311 (-) False dynll2a
TU261738 other downstream 815294 5797985 ~ 5803878 (-) False LOC113532612
TU261666 other downstream 908281 5710098 ~ 5710891 (-) True G220990
TU260466 other downstream 2802385 3811560 ~ 3816787 (-) False LOC113544484
trnap-cgg_8 other upstream 559235 7195523 ~ 7195594 (-) True trnap-cgg_8
XR_004579456.1 other upstream 756127 7392415 ~ 7463499 (-) True zgc:77784
TU263800 other upstream 2304730 8941018 ~ 8946899 (-) True G222809
TU264952 other upstream 3671772 10308060 ~ 10312487 (-) False LOC113533081
XR_004579509.1 other upstream 6304622 12940910 ~ 13007559 (-) True nf1a

Expression Profile