RNA id: TU262426


Basic Information

Item Value
RNA id TU262426
length 1110
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G221633
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 6760656 ~ 6761787 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aagaatttaactgtgtataaataatttatacatgaaagagttaaaatgaaaaacaagccCACAGTTAAGTGCATCATGAAGATGGCAGCTGTGTCTGATTTACATGAACTTTACAACaacgcttttaaaaaaaactcactttATATGCAGAACAATGCAGATACATTTATACACCGTGTCAACTTAGTCCTAAATACAGCTCTACTTCCTGCCTATGTGCACTACATACAGGAGGACATAAGGGCTTCTGCACACTGTGTAGTGTACTGTGTAGTGAACATGTCCCTGACTGGGGACTCGGCCATGATCAGCCGGGccgctgctcacacacacacacaggctcgcTGGCGCTAGCGGTCCTCGCCACGGCACACCTATAATTAGCATGCACTTAACATGTCTCTAACAAGAGTGGCAAGGGACACCAAACTATTTAGTTGTCAATAATTATGCTAATTTAATCtataaaacaaaattctttACAGTCGAGGTATTACTAGCTAAGAATTTACGTTACGCATAGCACGCTAGCTTCTCAGCTGTTTTCGCCCAGGCTTTGCGGTTACACGTTTCTTTTTCCACCCGTATTCCGGGGACAGCCCCGCCTcctgcgctgtgattggctaatACAGTTAAAATTCCCCGGTATTCCCGCGTGGACGCTGAGCTCCTGGCCAATCGTAGCGCAGGGGGCGGGATTTTTCTTCCCCCGCAAAACGGGTATTCAGTTACACTGACAAACACAGCTGAGGCCTAACATCTCTGGCGCTCGGCATTTAAGTAAAGCAGGCCTACTTTAGCAAGCAGGCTAACCGCCTAGCTGGCAGGGCTGGAACAAGCGTGcaaaggaagaggaggaaagcCAGTTACCTCCTCGAGCTCGTCGTCGGAGACATTTTCCTCCGGCTGATCCAGATCAATATCGAAGACACCGGCCATGGTTTATTTCACCGCGTTTAATCCACTTCCAGCGTGAGAGTAGAGGTTGTGCTTCCCGCCTCATGGACGCGAACGCACCGTCGCCATGACCAGCTAGggtctgcgcatgcgcagtacgCCGCAGTACCGCGCATAAAGCACGCCTCCACATGGCAGAGTGGGGAACGCGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262435 lncRNA downstream 1038 6759410 ~ 6759618 (-) True G221638
TU262406 lncRNA downstream 72345 6687589 ~ 6688311 (-) True G221618
TU262299 lncRNA downstream 120827 6639043 ~ 6639829 (-) False LOC113532805
TU262210 lncRNA downstream 245691 6513828 ~ 6514965 (-) True G221448
TU262227 lncRNA downstream 343031 6416882 ~ 6417625 (-) True G221461
TU262458 lncRNA upstream 44368 6806155 ~ 6806367 (-) True G221659
TU262483 lncRNA upstream 105997 6867784 ~ 6870274 (-) True G221681
TU262484 lncRNA upstream 109950 6871737 ~ 6871979 (-) True G221682
TU262485 lncRNA upstream 111044 6872831 ~ 6873359 (-) True G221683
TU262657 lncRNA upstream 360930 7122717 ~ 7124202 (-) True G221812
XM_034310652.1 mRNA downstream 4390 6748916 ~ 6756266 (-) False tubd1
XM_026924352.2 mRNA downstream 5280 6748916 ~ 6755376 (-) True tubd1
XM_034310811.1 mRNA downstream 107238 6620567 ~ 6653418 (-) False LOC113532805
XM_026924556.2 mRNA upstream 69447 6831234 ~ 6840971 (-) True LOC113532877
XM_026924088.2 mRNA upstream 121341 6883128 ~ 6888991 (-) True LOC113532633
XM_026924665.2 mRNA upstream 169735 6931522 ~ 6936069 (-) True atf5b
XM_026924666.2 mRNA upstream 169735 6931522 ~ 6935788 (-) False atf5b
XM_034310612.1 mRNA upstream 197336 6959123 ~ 7039860 (-) False phldb1b
TU261846 other downstream 736345 6021220 ~ 6024311 (-) False dynll2a
TU261738 other downstream 956778 5797985 ~ 5803878 (-) False LOC113532612
TU261666 other downstream 1049765 5710098 ~ 5710891 (-) True G220990
TU260466 other downstream 2943869 3811560 ~ 3816787 (-) False LOC113544484
trnap-cgg_8 other upstream 433736 7195523 ~ 7195594 (-) True trnap-cgg_8
XR_004579456.1 other upstream 630628 7392415 ~ 7463499 (-) True zgc:77784
TU263800 other upstream 2179231 8941018 ~ 8946899 (-) True G222809
TU264952 other upstream 3546273 10308060 ~ 10312487 (-) False LOC113533081
XR_004579509.1 other upstream 6179123 12940910 ~ 13007559 (-) True nf1a

Expression Profile