RNA id: TU263325


Basic Information

Item Value
RNA id TU263325
length 403
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G222391
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 8196805 ~ 8197207 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGCTCAGGGGGTGAAAAATATTCGGCACTGTCTCGCATCTGGCGCTCGATAAAAGTCTTGTACTCGTCAGGATTATTTTGGGCCATATCATCCAGCATGGACCAAAACTGGTTCACATGGTTTAGAGCAGCATTCTGACATGCGGAAATGTCCATGCTTTAACACGTTATCTATGATTAGATAATTTAGTTGGCTAACTATGCGTCACTGCTTGTCTAAACTTCGCGTATAACTAGATAAATTCGCTATCTAGTAGGTTAACGCCGCGTTAACTTGGATAAGTTAGTTAGTTATCCGCTTTGGTCGCAAATGTTTCACTTAAGTAAACTAAGCTTTCAAACTAATTAAACTGGCCTATACCGGACCGACCAGCGACAACAGGCAACCTGAGTTAGTATCGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263294 lncRNA downstream 33957 8162633 ~ 8162848 (-) True G222377
TU263284 lncRNA downstream 64101 8132363 ~ 8132704 (-) True G222367
XR_003403360.2 lncRNA downstream 619749 7576554 ~ 7577056 (-) True LOC113532601
TU262771 lncRNA downstream 824485 7371370 ~ 7372320 (-) True G221902
TU262694 lncRNA downstream 975876 7218666 ~ 7220929 (-) True G221844
TU263469 lncRNA upstream 43857 8241064 ~ 8242176 (-) True G222522
TU263531 lncRNA upstream 207643 8404850 ~ 8406183 (-) False sorl1
TU263542 lncRNA upstream 267369 8464576 ~ 8491284 (-) True G222591
TU263563 lncRNA upstream 347705 8544912 ~ 8548374 (-) True G222610
TU263847 lncRNA upstream 840273 9037480 ~ 9043751 (-) True G222852
XM_026924504.2 mRNA downstream 59596 8122414 ~ 8137209 (-) True LOC113532837
XM_026924611.2 mRNA downstream 288947 7745299 ~ 7907858 (-) False cadm1b
XM_034310363.1 mRNA upstream 6455 8203662 ~ 8212072 (-) False dixdc1a
XM_026923916.2 mRNA upstream 6455 8203662 ~ 8212072 (-) False dixdc1a
XM_026923915.2 mRNA upstream 6455 8203662 ~ 8212072 (-) True dixdc1a
XM_026924164.2 mRNA upstream 207622 8404829 ~ 8478912 (-) False sorl1
XM_026924163.2 mRNA upstream 207622 8404829 ~ 8478912 (-) True sorl1
XR_004579456.1 other downstream 733306 7392415 ~ 7463499 (-) True zgc:77784
trnap-cgg_8 other downstream 1001211 7195523 ~ 7195594 (-) True trnap-cgg_8
TU261846 other downstream 2172494 6021220 ~ 6024311 (-) False dynll2a
TU261738 other downstream 2392927 5797985 ~ 5803878 (-) False LOC113532612
TU261666 other downstream 2485914 5710098 ~ 5710891 (-) True G220990
TU263800 other upstream 743811 8941018 ~ 8946899 (-) True G222809
TU264952 other upstream 2110853 10308060 ~ 10312487 (-) False LOC113533081
XR_004579509.1 other upstream 4743703 12940910 ~ 13007559 (-) True nf1a
XR_004579489.1 other upstream 4872929 13070136 ~ 13080860 (-) True wsb1
TU267049 other upstream 5170556 13367763 ~ 13368850 (-) True G225622

Expression Profile