RNA id: TU263531


Basic Information

Item Value
RNA id TU263531
length 1334
lncRNA type sense_over
GC content 0.40
exon number 1
gene id sorl1
representative False

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 8404829 ~ 8478912 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttTCTGGCTATAATGCTGAATCACTGTAAGGCATTGAAGAATGATTGGAGGTTATCTCTTTAGTTGTTACCAGAGTGTTGGGAGTGTTTAGGTCTTCAAAGATGACACAAGTCCCTACACCCACTTCCCATCCCACCCCCCATcccctgctttaaaaaaaaaagctttcccAAAATTTGACATGGAACTTTTCAAAATGGCACTGATTTCTCtttacattgttttattattttcttaagtAATGGTGAAACTGTTACAATGCTCCCATTAGCTGTCATTTTAACAGTCTTTTGATGTTCtcagggaggtgtgtgtgtgtgtgtgtgtgttttagggcaTGGTACCAGTGTTACCAGCTTTGTGTAAGTGGATAgggtgtgtttttctctctgaggCAGTCATGCAGCGCAGCAGCTTTGTCTTTACACATCAGTCAAGACTTCATCGTCACATCTTGTGCCAAATGTACAAGAAAGCAGagagaatataatataatgttagcCTGACTGCGCTTTGTAGAGGTACAAGGAAAACATGTTGAATCTCATCGATATCGGGTACTGCTCTCAAGCCTTGTTCatgaatgtatttttgtttctatgtattttttttgcgTTAATGTGGAAAACAATCACACTGAATACAGAGCCCGCCTCTATTTTTCCTGAATTTAGACTTGTTCATTTTCATGTTGGAGTCAGGTACAGTCGGTACGAGTGGACAGATTGATCCATTAACATCATGTCTGCCCTGTGTAGTCACAATAACTCAGCTGTGATTTCTCTTCTTCTTAAAGTTCTACTGTGTTGTGAAATGTGTAACCCGACTACactgttttctctttcagctgTAGACATGACTGCACAGATACTCTTGCAGAATTGTATCATTCCCAGTGATCTAGTTTGATTTTCAGTCCCGTAGTCTGCCACATATGCCTTATTAAAAACAGGTTGAATTGTGTGGTCATGTCTGGTCGATGAAAACTTAAAAACAAGGCCCAAAATATACAAAGATGACTGCAACTTAGTGTCAGCTGTATTGTGTTTCACTGAAGCACCAGGTTGAATTCTGAGCCACCAATCCCCCCTCCTCCCCAAACATTTGACATTTGTCATCATCCCTCAGTAAGTCTTTGTGGCTATGTGTGAAATTTGCAATGTTGAAACCCACTGTTTTTGTGAAATAGGATGTTTACTTCTGCACAGTAATGACATCCGGCACAGACTTGTTTGGATTTGATTCTGCTTGCCTGTGGAGGGTTTTGCGGATATGAATCTTGTGAAGAGGTACCGTCAGAGGTGTTTTAAGAACCACTTATGCTCAAATAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263469 lncRNA downstream 162674 8241064 ~ 8242176 (-) True G222522
TU263325 lncRNA downstream 207643 8196805 ~ 8197207 (-) True G222391
TU263294 lncRNA downstream 242002 8162633 ~ 8162848 (-) True G222377
TU263284 lncRNA downstream 272146 8132363 ~ 8132704 (-) True G222367
XR_003403360.2 lncRNA downstream 827794 7576554 ~ 7577056 (-) True LOC113532601
TU263542 lncRNA upstream 58393 8464576 ~ 8491284 (-) True G222591
TU263563 lncRNA upstream 138729 8544912 ~ 8548374 (-) True G222610
TU263847 lncRNA upstream 631297 9037480 ~ 9043751 (-) True G222852
TU264411 lncRNA upstream 1304251 9710434 ~ 9713059 (-) False LOC113532707
XR_004579474.1 lncRNA upstream 1351975 9758158 ~ 9758966 (-) True LOC117599042
XM_034310363.1 mRNA downstream 192778 8203662 ~ 8212072 (-) False dixdc1a
XM_026923916.2 mRNA downstream 192778 8203662 ~ 8212072 (-) False dixdc1a
XM_026923915.2 mRNA downstream 192778 8203662 ~ 8212072 (-) True dixdc1a
XM_026924504.2 mRNA downstream 267641 8122414 ~ 8137209 (-) True LOC113532837
XM_026924615.2 mRNA downstream 496992 7754031 ~ 7907858 (-) False cadm1b
XM_026923882.2 mRNA upstream 85605 8491788 ~ 8498469 (-) True sdhdb
XM_026924084.2 mRNA upstream 96511 8502694 ~ 8512202 (-) True il4i1
XM_026923898.2 mRNA upstream 156987 8563170 ~ 8613424 (-) True sik2b
XM_026923992.2 mRNA upstream 209254 8615437 ~ 8630154 (-) False laynb
XM_026923991.2 mRNA upstream 209254 8615437 ~ 8630151 (-) True laynb
XR_004579456.1 other downstream 941351 7392415 ~ 7463499 (-) True zgc:77784
trnap-cgg_8 other downstream 1209256 7195523 ~ 7195594 (-) True trnap-cgg_8
TU261846 other downstream 2380539 6021220 ~ 6024311 (-) False dynll2a
TU261738 other downstream 2600972 5797985 ~ 5803878 (-) False LOC113532612
TU261666 other downstream 2693959 5710098 ~ 5710891 (-) True G220990
TU263800 other upstream 534835 8941018 ~ 8946899 (-) True G222809
TU264952 other upstream 1901877 10308060 ~ 10312487 (-) False LOC113533081
XR_004579509.1 other upstream 4534727 12940910 ~ 13007559 (-) True nf1a
XR_004579489.1 other upstream 4663953 13070136 ~ 13080860 (-) True wsb1
TU267049 other upstream 4961580 13367763 ~ 13368850 (-) True G225622

Expression Profile