RNA id: XM_026924163.2


Basic Information

Item Value
RNA id XM_026924163.2
length 8877
RNA type mRNA
GC content 0.52
exon number 48
gene id sorl1
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 8404829 ~ 8478912 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctcacgcgcgcacacacacacacacacactcgcagtcGCTtgagcgcacacacaaacaaacatggcGGCCAGGCAGAGGGGTAAGATGCTCGCTGTGGGTCGTAGCGCtgcgtgtgtgtacgtgtattTGCTGTTATGGCTCGTTCCCGGCTCGCTCTGCTCCACACTCTGGCTTCACCGGGATCACAGGTTCATGCTGCCGCAGGACCGCGGCTTTTCTCTGCTCACTGCGTCTGATCAGCTCGCGGAGAGCGGCGCGGGGAGAGGCGCGGGGAGAGGCGCGGAGCAGCACAGCTCCAGCCAGCACCGACTCCGCGCTCGGAGGAGCACCGCCGACACAGCCGTGCCCAAGGTTTACGGACGGGCCAACCTGAATGACTCTCATAACCAGATGGTTGTGCATTGGGCTGGAGAGAAGAGTAACGTCATCGTGGCTTTGGCAAGAGACAGCATTGGAGCCACCGACCCCAAGAGCAGCtcgGTTTACGTGTCATATGACTATGGAACCACCTTCATCCATATATCAGATAAGTTCAACCTGCCTAGTGGGAAGGAGAACAGCAAGCAAGTGATCTCGCAGTTCTATCACAGCCCTGCTGATAACAGACGCTACCTTTTTGCGGACACCAAAAACAGTTATCTTTGGAACACCTTTGACTTCTGCAAGAGCGTCCAGGGATTCTCCATCCCCTTCAAACCCACAGACCTGCTCCTGCACAGCAAGAGGCCAAACCTGGTCCTGGGATATGACAGTTCCCACCCTAATAAACAGCTGTGGAAGTCAGATGACTTTGGAGAAACATGGGTGCTGATTCAAGAACACGTCAAGTCCTACTTCTGGGGAGTTGAGCCATACGACAGCCCAACCACAGTGCTGGTCCAGAGGCATGAACCCCAGGGTGTCTCCAGCATTCTCAGCAGCACCGACTTCTTCCAGAGCGAGGAAAACCGACACATCATTCTGGAAAGAGTGGACAGCTTTCAGCTCCGAGACAAGTACATGTTCGCTACTACAACCAGGaCGCTGCTCGGGAGCCATGAGCCACAGTCGGTACAGCTGTGGGTCTCCTACAACCGCCAGCCCATGAGAGCAGCCCAGTTTAACACTCGCCACCCTATCACTGAGTATTACATAGCAGATGCCTCGGAGGatcaggtgtttgtgtgtgtgaaccacaacaacaacgtcacacacctgtacatctCAGACACGCAGGGGCTcgccttttctctctctctggagaaTGTGCTGTATTATAGCCCCGAGGGTTCAGGAAGCAACACCCTCATCAGgtactTTGCCAATGAGCCGTTTGCAGACTTGCATCGTGTGGAGGGCCTGCGTGGCGTGTTCGTGGCCACGCTCATCAACGGCTCGCTCAGCGAAGACAACATGCGCTCGGTGATCACCTTTGACAAGGGCGGCACCTGGGAGTTGCTGAAGCCGCCGAGTTCCGACAGCCTCGGGGGCTCCATCGATTGCCAGATTTCGAAAGGTTGCTCCCTGCACTTGGCTCAGCGCTGGAGTCAGCTGTTGAATATTCAGCTGCGCAGGATGCCCATTCTGAGCAAAGAGTCTGCACCTGGCCTCATCATGGCAACAGGATCTGTGGGAAAGAATCTGGCCAATAAGCCCAACGTGTACGTCTCGAGCAGTGCCGGAGCCAGGTGGAGAGAGGCTCTGGCTGGTCCTCACTTCTACACCTGGGGGGACCATGGAGGCATCCTGATGGCTATTTCCCAGGGCGGCTCCACCAGAACACTTAAGTTCAGCACCAACGAGGGCGAGACGTGGAGTGAGTTCCAGTTCTCCCAGCAGGAGGTCTACGTGTACCAGCTGCTGACCGAGCCGGGCGAAAAGAGCACCATCTTCACTATCTTTGGTTCCTACGCTGATCAGACACACAGCTGGCTCATTCTGCAGGTCAACGTCAGCGACGTGCTCGGTGTGCCATGCTCTGAGGGTGACTATAAGCCCTGGTCTCCGTCCGATGAGCATGGAAACGGCTGCGTTCTGGGCCGTGAGTTGCTCTTCAAGCGTCGCTCGCCGCACGCAACCTGCTTCAATGGCGAAGACTTTGATCGACCTGTCAGCCTGTCCAACTGCTCCTGCACACGTCAGGACTACGAATGTGATTATGGGTTCAAGCTGAGTGAGGACCTCTCTCTTCAAGTGTGTATTCCTGATCCTGAGTTTTCTGGCAACTTGTACGCCCCTCCCGTACCCTGCCCAGTGGGCACGACGTACCGCCGCAGCAAAGGGTATAGAAAAGTGCCTGGAGATAGCTGCACTGGTGGAGATGTCGAGGCCCGGCTGGATGGAGAGATGCTCCCATGTCCTATTGGAGagaGTAATGAATTCATCCTGTACGCCGTGAGGAACTCTATCCACCGCTACGACCTGGCGACGGGTGTGGACCAGCCCCTGCCTCTCTCAGGCCTCCGTGAGGCGGTGGCTCTGGACTTTGACTATGAGAGGAACTGCCTCTACTGGGCTGACATTTCACTCGACACCATACAGAGACTGTGTTTGAACGGCAGTTCTGGCCAGGAAGTGATTGTTAGGAAAGCCCTGCAAAATGTCGAGGCTCTGACCTTTGATCCTGTCAGCCGACTTCTTTACTGGGTGGATGCTGGCTCTCAGAAGATAGAGGTGTCAAACCCTGATGGGGATCTGAGACGCACCCTGGTCAACTCCTCCATTTTGGAGCATCCTCGAGCCCTGGCCCTTATGCCTGGAGAGAGCCTGATGTTCTGGACGGACTGGGGGGACAGAGCAGCCGGCGTTTACCGCAGCTGGATGGACGGCTCCAACGTGTCCCGCATCGTGTCGGATGGTGTGCGCTGGCCCAACGGCATCACAGCTGACGAGCACTGGCTCTACTGGACCGAAGCGTACGGAGACCGCATCGAGAGATCTGACTTCACAGGTGGACAGCGCACAGTGCTCATGGAGGGGCTGCCACATCCCTATGCTATAGCTGTATTTAAGAATGACCTCTACTGGGATGACTGGTCAAGAATGGGCATCTTCAAGGCACCTAAATCAGGCTCACTGAACAGCGAGCTTCTCGTTGGCAGGCTGACCGGCGTCATGGACCTTAAAATCTTCTATAAGGGCAAAACTAGAGGTCATAACGCATGTGTGGATCAGCCATGTACACTGCTGTGTTTGCCCCAGCCGGGCCACAGGCATAGCTGTGTGTGTCCAGACGGAGTAGCCACCACCAGGCTGCCTTCAGGAGagctccagtgtcagtgtccCAGCGGGTACCAGCTCCGGAACAACACATGTGTGAAGACGGAACACACCTGTCTGCCGAACCAGTACCGATGCTCAAACGGCAAGTGCATCAGCAGCATCTGGAAGTGCGACAGCGACAACGACTGTGGAGATATGAGCGATGAGCAGGAGTGCCcCACCACCTCTTGTGATCCATCCGTGCAGTTCCGCTGTGTAGCTTCAGGCTCATGCATCCCTTTGGCTTTCAAGTGTGATCACGAGGATGACTGTGGTGACAACAGTGATGAGGAGCACTGCGACTCTCATCAGTGTGGGCCTGCGGAGTTCACATGTGCGAGAGGAGTGTGTATTCGTGATGCCTGGCGCTGTGATGGTGATAATGACTGCCGGGACTGGTCTGACGAGGCCAACTGCACTGtgggCCACCATACATGTGAGAGCAGCAGTTTCCAGTGTCACACAGGTCACTGCATTCCTCAGCGCTGGGTTTGTGATGGCGATGATGACTGTCAGGATGGCTCTGATGAGGAGCCCAGTCACTgtgAGGGCGATCGCTGTAACGGCTTCCTGTGTTCCAATGGCACATGCTTGCCTGCCAGCTCCCACTGTAACGGCGTGGAGGAGTGCCCAGGGGGCGCCGACGAGCAGCACTGCGATCCGCTGTGCACGCGCTACATGGAGTTTGTGTGCAGGAACAGAGCTCAGTGTCTCTTCCAGTCGCTGGTGTGTGACGGCACGAAGCATTGCTCCGACGGCTCGGACGAGGACGCAGCTTACGCCGGCTGCTCCACGCATCCTGAATTTGAGAAGAAATGTGATGCCTACAATTTCCAGTGCTCcaacagcatgtgtgtgagtctggACTGGAAGTGTGACGGCATGGACGACTGTGGCGACTACTCAGACGAGGCAAACTGTGCAGGTTCTCCCACCGAGGAGCCGGGCTGCTCACGCTACTTCCAGTACGAGTGTAAGAACGGCCGCTGTGTGCCCACGTGGTGGAGGTGTGATGGTGAGAATGACTGTGGAGACTGGTCTGATGAGGCGCAATGCACAGACGGACTCTCTCCTCATACTCCTGCCCCGGGCCCTGCCACATGTGCCCCTAACCGTTTCCACTGCGGCTCTGGAGCGTGTATAGTGAATAACTGGGTGTGTGATGGCTATGCTGATTGCCCTGATGGCAGTGATGAAGTGGGCTGCCCCACAGcctcCAACAGCTCAGTGACTCAGATGCCCGTGCCCACTCATGCCCCTGACCCGACTGGCCGTTGTTTCAGAGGGCAGTTCCTGTGTCATAAGCCACCCACATGCATCCCGGAATGGCAGCGTTGCGATGGCCACCGCAACTGCCAAGACAACTCGGACGAGTCTGGCTGTCCTACGCGTGAGcctctggtgtgtgtgaatgggacACTGTGTGCTGACCGGGAGGCATGTGTACTGGAGAGTGAAAGGTGTGATGGCTTCTTAGACTGCTCAGACCACAGTGACGAGGACAACTGCACCGCCGACCAGCTGGTGTATAAAGTCCAGAACCTGCAGTGGCACGCGGACTTCTCCGGCACCGTCACACTCACCTGGTCCCggcccaaaaacatgcctgccTCCTCCTGCTCCTTCCTCATCTATTACAGGCTGGTAGGGGCTCAGCAGTGGACCATCATggacacacacagcaacaagGGCAGCTATACACTGAGTGTGCTGAGGCCAGACACCACCTATCAGGTGAAAGTGGTGACGCAGTGCCTCAGCAAGCAGCACAAGACCAACGAGGTGCTCACTCTGCGGACGCCCGAGGGCTtaccTGATCCTCCTCAGGCTTTGCAGCTAAGCTGTGATAACGCAGAGGACGGCACGGTGCTGTGCTCCTGGAGTCCTCCAGCGAATGCTCATGGCTTCATCAGAGAGTACATCGTGGAGTACAGCGAGAAGGGCAGTTCAGAGTGGTTTTCTCAGAGAAGTACTAGCACCAGTACTGAGGTTAAGAGCCTGCAGCCCAGCACCCTCTACAGGTTCAGGgttgcTGCAGTCACCAGCAGAGGGGTGGGCAACTGGACAGAGATTAAATCCATCATCCCTCAGAAAGCTTTGGCTCCCCCGGTTACAAAGATTACAAGCATCACGGAAGACACAGTGAAACTGGCCATCAGCTCTGACTACAAGGCTAAACACTATGTGGTGGTGCTGTCTTGGGTTTTCGACAAGCATGTGAAAGAATACAGGAACTTCAGTGTCTCAAATACTCTTACAGCCACTAATCTGACAGCGGGGACGGTGTATGAGGTGGCAGTGTGGGCACATACCACTGATGGAGACAGTCCCACTGCCCTGTCACGTCTAGAGACGGTAGGAACACAGCCAGCACAACCACTGCTCAAAGCCCGGGCACTCAATCAAACCGCTGTGGACTGCAGCTGGACTGGACCCCaggcacagataTATGGTGTGTTCTATGCCACCTCCTTCCTGGATCTTTACCGCCGGCCACGCAGTGTGAacagcaccagcaccagcatAACTGTCACCGTGGAGAGCGATGAGCAGTATCTCTTCCTTGTGCGGGTAATCTCACCGTATCTGGGCCCTCCGTCCGAATCAGCTGTAGTGAAGATGATCCCTAATGAAAGGCTTCCTCCACGCAACCTGCATAAAGTCCAAGTAGATAAAACGCAGGCTACACTGAAATGGCAGCCACCGTATGACTCCCCCAGCTCTCCTCTGACATATGTAGTGCATTTGAGGGACACAGTACGGAAGACGGAGCGTGATTATAAAATCACCACTCAGAACAACACAGTGGAGTACAGCCTCAAGGGACTGGAGCCTGGTGGTCGCTACAGTATCACCGTCCGCCTTCGCAACATGACCAAGGAGGCCAGCTACACTCTTAACACAGTTCCTCTACCTGCACCTGAAGCTCTCAAGATCCTTACCGAGCAAGACCATGTGTTCCTGTTTTGGAAGAGCTTGGCTGTCAAGGAGCGGAGTTTCAATGAGAGTCGTGGCTACGAAGTATCTGTGTATGACAGTGTAAGTAACTCCACCACATTGCTGGGAAACACCACAGAGACCTTCTTCAGGATCAGTAATCTGCTGGTGGGCCACAACTACACATTCTCAGTGCGCGCTCGCTGCTTGGTGAACGGCCAACTCTGTGGTGAAGCTGCGGTGTTGCTGTACGACGAGCTGGGGAGTGCAGGAGCAGgtccCAGTGACTCAGCTGCTCATTCAGGCCATTCAGGTGACACAGCAGCCGTGGTGGTGCCGGTGctgtttgtgctgctgctgtgtgtatgtggaggTCTCGTGGGTCTGTACGTGCGCCACCGCCGCCTGCAGCACAGCTTCACCGCCTTCGCCAACAGCCACTACAACTCACGCCTTGGCTCAGCCATCTTCTCCTCCGGAGATGAGCTCGGCGATGATGACGAGGATGACCCCATGATTGGCGGCTTTGCAGACGACGTTCCCATGGTGATAGCATAGTCGCATAGTCGAGCCACTATGCCCTTTTCCTCCGAATCACTCTCCCCTCGtcttctgtttgtctctccTCCTTTTTCACGTGTATCCCTGCAGTATACCTCCGCCCCATTCGGCTGACACCACCCCCCCCATCTGGGATTTCAGGattcaaagaaagaaaggagaaaacaaagcaaaagagatattttttaaaaaaaaaatctatgatgCACTTTTTCGGATGCGCAAtagcttatttttttatatataatatatcgtTTGTGGGTGATGGACTTTGTGGGCAGGAGAAAACAAAAACGAGCAGAAGCAAGCTTTTGAAGAGGTTTGTCAGCTGGACTCAGTGGACAGGGAAAAGACCCTACAGTCCCACcaaatcacaaacacactggAGCATTGCATTCGCTTAAAAAAGCCTAAATAAGCACCTATCAACTATCCACAAGAACagaaaactcaacaaaaaaaatccctaaaacatataaatgtacaaatgaaaaaatggaCCTATGAATGGCAGttttaaaaaagggaaagtGGTACTTAGGCTGTTGACAGTGAATTGCACAGAAATTGATTGTTCTATATTCTTTTATTGTGTCACTTTGTCAGTAGACGTGTATATTTGCCCACAGTACATTGTTAACATTTTGATGTTCAGATCTGCTTCTCTTTTTAATGTGTCTACATATCGCTTGTGCTTGTGGAAAATGTGAACTCACCTTGTGTTTTAAGAAaactttatttcttctttttttttttttttttttttttttttttttacataacttTCTGGCTATAATGCTGAATCACTGTAAGGCATTGAAGAATGATTGGAGGTTATCTCTTTAGTTGTTACCAGAGTGTTGGGAGTGTTTAGGTCTTCAAAGATGACACAAGTCCCTACACCCACTTCCCATCCCACCCCCCATcccctgctttaaaaaaaaaagctttcccAAAATTTGACATGGAACTTTTCAAAATGGCACTGATTTCTCtttacattgttttattattttcttaagtAATGGTGAAACTGTTACAATGCTCCCATTAGCTGTCATTTTAACAGTCTTTTGATGTTCtcagggaggtgtgtgtgtgtgtgtgtgtgttttagggcaTGGTACCAGTGTTACCAGCTTTGTGTAAGTGGATAgggtgtgtttttctctctgaggCAGTCATGCAGCGCAGCAGCTTTGTCTTTACACATCAGTCAAGACTTCATCGTCACATCTTGTGCCAAATGTACAAGAAAGCAGagagaatataatataatgttagcCTGACTGCGCTTTGTAGAGGTACAAGGAAAACATGTTGAATCTCATCGATATCGGGTACTGCTCTCAAGCCTTGTTCatgaatgtatttttgtttctatgtattttttttgcgTTAATGTGGAAAACAATCACACTGAATACAGAGCCCGCCTCTATTTTTCCTGAATTTAGACTTGTTCATTTTCATGTTGGAGTCAGGTACAGTCGGTACGAGTGGACAGATTGATCCATTAACATCATGTCTGCCCTGTGTAGTCACAATAACTCAGCTGTGATTTCTCTTCTTCTTAAAGTTCTACTGTGTTGTGAAATGTGTAACCCGACTACactgttttctctttcagctgTAGACATGACTGCACAGATACTCTTGCAGAATTGTATCATTCCCAGTGATCTAGTTTGATTTTCAGTCCCGTAGTCTGCCACATATGCCTTATTAAAAACAGGTTGAATTGTGTGGTCATGTCTGGTCGATGAAAACTTAAAAACAAGGCCCAAAATATACAAAGATGACTGCAACTTAGTGTCAGCTGTATTGTGTTTCACTGAAGCACCAGGTTGAATTCTGAGCCACCAATCCCCCCTCCTCCCCAAACATTTGACATTTGTCATCATCCCTCAGTAAGTCTTTGTGGCTATGTGTGAAATTTGCAATGTTGAAACCCACTGTTTTTGTGAAATAGGATGTTTACTTCTGCACAGTAATGACATCCGGCACAGACTTGTTTGGATTTGATTCTGCTTGCCTGTGGAGGGTTTTGCGGATATGAATCTTGTGAAGAGGTACCGTCAGAGGTGTTTTAAGAACCACTTATGCTCAAATAAACACGTTGAAACTGTTAAAACTGG

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K24498 SORL1; sortilin-related receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263469 lncRNA downstream 162653 8241064 ~ 8242176 (-) True G222522
TU263325 lncRNA downstream 207622 8196805 ~ 8197207 (-) True G222391
TU263294 lncRNA downstream 241981 8162633 ~ 8162848 (-) True G222377
TU263284 lncRNA downstream 272125 8132363 ~ 8132704 (-) True G222367
XR_003403360.2 lncRNA downstream 827773 7576554 ~ 7577056 (-) True LOC113532601
TU263563 lncRNA upstream 66000 8544912 ~ 8548374 (-) True G222610
TU263847 lncRNA upstream 558568 9037480 ~ 9043751 (-) True G222852
TU264411 lncRNA upstream 1231522 9710434 ~ 9713059 (-) False LOC113532707
XR_004579474.1 lncRNA upstream 1279246 9758158 ~ 9758966 (-) True LOC117599042
TU264417 lncRNA upstream 1323580 9802492 ~ 9806485 (-) True LOC117599044
XM_034310363.1 mRNA downstream 192757 8203662 ~ 8212072 (-) False dixdc1a
XM_026923916.2 mRNA downstream 192757 8203662 ~ 8212072 (-) False dixdc1a
XM_026923915.2 mRNA downstream 192757 8203662 ~ 8212072 (-) True dixdc1a
XM_026924504.2 mRNA downstream 267620 8122414 ~ 8137209 (-) True LOC113532837
XM_026924615.2 mRNA downstream 496971 7754031 ~ 7907858 (-) False cadm1b
XM_026923882.2 mRNA upstream 12876 8491788 ~ 8498469 (-) True sdhdb
XM_026924084.2 mRNA upstream 23782 8502694 ~ 8512202 (-) True il4i1
XM_026923898.2 mRNA upstream 84258 8563170 ~ 8613424 (-) True sik2b
XM_026923992.2 mRNA upstream 136525 8615437 ~ 8630154 (-) False laynb
XM_026923991.2 mRNA upstream 136525 8615437 ~ 8630151 (-) True laynb
XR_004579456.1 other downstream 941330 7392415 ~ 7463499 (-) True zgc:77784
trnap-cgg_8 other downstream 1209235 7195523 ~ 7195594 (-) True trnap-cgg_8
TU261846 other downstream 2380518 6021220 ~ 6024311 (-) False dynll2a
TU261738 other downstream 2600951 5797985 ~ 5803878 (-) False LOC113532612
TU261666 other downstream 2693938 5710098 ~ 5710891 (-) True G220990
TU263800 other upstream 462106 8941018 ~ 8946899 (-) True G222809
TU264952 other upstream 1829148 10308060 ~ 10312487 (-) False LOC113533081
XR_004579509.1 other upstream 4461998 12940910 ~ 13007559 (-) True nf1a
XR_004579489.1 other upstream 4591224 13070136 ~ 13080860 (-) True wsb1
TU267049 other upstream 4888851 13367763 ~ 13368850 (-) True G225622

Expression Profile