RNA id: TU263800


Basic Information

Item Value
RNA id TU263800
length 1529
RNA type TUCP
GC content 0.43
exon number 2
gene id G222809
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 8941018 ~ 8946899 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGATTTAAGACAATGCCAGTGTGAGCATTCACACTCGCGTCTTTATAGCACATTCTTGTGACTCTGTGACATTAATGCCCCGTTTCCCCAGACACCTCTGCCTTCCTTTGATGGATCCCAATTACCCAGAAGCAGTGCGGGCTGGTATAGACTAGGGTTGTGCAATAAGGGCTGAAAGGATAATTACGAATACAGtacttaatattattattattcagcctattttatcacactttatGATTCTATCATTTTAATACAACAGAAAACAGTTATTTCTTTCATAGATTATTCATTATAGTTAAAGCCGGCGTTACACTGTACAATATTTGGCCCGATTTTGTTCTCGCAGGCACAATCGAACAGTAGTCTTAGATCACATAATGTGACCTGCTTACTGGTGGCGGATTTTCTGCCACTGAGACCAAAGACAGCCAATGACAAAATTCTGGCAAACACAGCAAAGTGTCTTAAAATTTTGCTTAAAATTTCAGTGCAAGTGCTGCTATGACActtgtctaaaatccaccaatagcaGGATGGCATCTGATTATGCAAAACCCAGGACACAGCTACAAACACTTCGGAGATCGTTTATGCAATAAGCATACAGAATATTAACAAAACTTGTACCAAACTGTTATGCAGTTCCCAAGTCTGATCGGTCAGAAGGTACTGAccaattttctataacatttctaaccatttctatagtaacaattcattCAAAAGGACTTCTGTTGAGGACATGACACATGATCTAAGGCTAatattacactgttaaaaacgtgttaattaacaaaagaaaaacatataaatcattaatatcatcattaataaaaagcaggattatagtttatatttgttatagtTATTGGTAAAAATGCTTAATGTGtggtgtgtgtgtattagtgtgtatgtgttcctCATCTCACCTGTTTAAGGTCTGCCACGAAAGTGATGAGTGTGCCGTCAGCCTGCCTGTACTCCAGTGTGATGGAGTCTCTCTCACTGTCCgcctccagcagctcctcagtGATCCGGCCATCAGCGAGTCGAACCCTGACTTTCAGCTCGGAGCACAAACCAGCCCTGAGCACTAAAGCCCAGAGGTACAAGATGACTCCAACTGACCCCTGCGACCCGAACCGCGCCAACATCCCCAAGCGAGGCGAGAACGCGCCCTCAAAACGCAGAGCGCACAGAGCTGAGCCACACAAGCGTCTCCGAGTGAAGCGGCGGTGAACCGATTCGCCTCATTCCCCTgagttcccacacacacacacacacacacacacacacacacacacacacactaacaaacaaaccTCACAGGGGTTCTTTTTAAAGCTCTGCGTCCATGTTCTCACGTCAGTTTTATAAGAGAAACCCCTCGACtaccacacaaacaaacaaaaagttgtAAACTCAAAAATCTCAGACTTTGACTCAGTGAGCTGTGATAGAGACGTGGCtgaagccaaacacacacacacacacacacacacacacactgcttcaccGAGTGGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263563 lncRNA downstream 392644 8544912 ~ 8548374 (-) True G222610
TU263542 lncRNA downstream 449734 8464576 ~ 8491284 (-) True G222591
TU263531 lncRNA downstream 534835 8404850 ~ 8406183 (-) False sorl1
TU263469 lncRNA downstream 698842 8241064 ~ 8242176 (-) True G222522
TU263325 lncRNA downstream 743811 8196805 ~ 8197207 (-) True G222391
TU263847 lncRNA upstream 90581 9037480 ~ 9043751 (-) True G222852
TU264411 lncRNA upstream 763535 9710434 ~ 9713059 (-) False LOC113532707
XR_004579474.1 lncRNA upstream 811259 9758158 ~ 9758966 (-) True LOC117599042
TU264417 lncRNA upstream 855593 9802492 ~ 9806485 (-) True LOC117599044
TU264418 lncRNA upstream 856045 9802944 ~ 9806485 (-) False LOC117599044
XM_034310866.1 mRNA downstream 126470 8799467 ~ 8814548 (-) True LOC113532830
XM_026924270.2 mRNA downstream 144990 8775146 ~ 8796028 (-) False scn3b
XM_026924269.2 mRNA downstream 144990 8775146 ~ 8796028 (-) False scn3b
XM_026924271.2 mRNA downstream 153960 8775146 ~ 8787058 (-) False scn3b
XM_026924268.2 mRNA downstream 153963 8775146 ~ 8787055 (-) True scn3b
XM_034310627.1 mRNA upstream 586151 9533050 ~ 9567354 (-) True mcamb
XM_026923911.2 mRNA upstream 586151 9533050 ~ 9567354 (-) False mcamb
XM_026923910.2 mRNA upstream 586151 9533050 ~ 9567317 (-) False mcamb
XM_026923912.2 mRNA upstream 586152 9533051 ~ 9567352 (-) False mcamb
XM_026923914.2 mRNA upstream 638745 9585644 ~ 9589292 (-) True c1qtnf5
XR_004579456.1 other downstream 1477519 7392415 ~ 7463499 (-) True zgc:77784
trnap-cgg_8 other downstream 1745424 7195523 ~ 7195594 (-) True trnap-cgg_8
TU261846 other downstream 2916707 6021220 ~ 6024311 (-) False dynll2a
TU261738 other downstream 3137140 5797985 ~ 5803878 (-) False LOC113532612
TU261666 other downstream 3230127 5710098 ~ 5710891 (-) True G220990
TU264952 other upstream 1361161 10308060 ~ 10312487 (-) False LOC113533081
XR_004579509.1 other upstream 3994011 12940910 ~ 13007559 (-) True nf1a
XR_004579489.1 other upstream 4123237 13070136 ~ 13080860 (-) True wsb1
TU267049 other upstream 4420864 13367763 ~ 13368850 (-) True G225622
TU268481 other upstream 6865490 15812389 ~ 15844783 (-) True G226830

Expression Profile