RNA id: XM_034310466.1


Basic Information

Item Value
RNA id XM_034310466.1
length 4507
RNA type mRNA
GC content 0.42
exon number 35
gene id LOC113532707
representative False

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 9677259 ~ 9713059 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGACTGCATTGGATATGGGGCTGTCACGTGATGAACGAACGACTCAGACCCGAAGACTTGTCAGatatTTCATGGTGACATTTCCTGCAGTAATAGAGTCTGGCTCTGAGGCTAAACTGTGTGTAAGTCTTCTGAAGCCTAATGAGACTCTGCAAATGGACATTTATCTGATTCACAACAACCATCGGAGAACTCTTTTACAAGAGACAGTAGAAAAGGAGATTCACCGCTGTTCTCAGTTTAAGGCTCCACAGGTTGAGGGTAATTCAGTGCAGGAGATCAAAATAGAAGTCAAAGGTGAAAGCTTTAAcatgacagagaaaaagaaagtgatgtTTAAATCCTATGACGCATTGGTATTTGTTCAGACTGATAAACCCATCTACAATCCAGGCCAAACAGTAAATTTCAGAATTGTCACTATGGATTctaattttattcctcttgaACAAAAGTACAGCACAGTAATAATTGAGGATAATAACAGTAACAGGATTGGTCAGTGGACGAATGTGTCCTCGACAGGCCTGATACTGCAGCTTTCTCATGAGCTAAATGCTGAGGCTCCACTGGGAAGTTATCAGATAACTGCTAAAACTGAAGAAGGAATATTCACACATGCTTTTATGGTGCAAAAGTATGTTTTACCCAAGTTTGAGATTACAGTAAAAGCACCAGAAGAACATAGTGTTGGTGAGGAGGAACTGAAGCTGGAGGTTTGTGGAACGTACACATATGGACAGCCAGTACCTGGTGCAGCACTGGTGCAAATGTGTCGTAAATTTAGGCAGACATATCTTTATCATGAGGAAGCCCCAATGACTGCGCCATGCCTGGTTGAAAAAGTGAAGATGAGTCAGACTGGTTGTGCCTTCGTTATATTGAATGTATCACCTTTTATGAATtctgaaaataattttgaaaaccaTCTTAATGCTACTGTTACACTAACAGAGGAAGGAACAGGATTTTCCATGGTAAAATCTGTAATCATAACACTCACTTACCAAATTGGTAAAGTGGAACTTGTGGATTTACCAAAAAACTTTGAACACGGGGCAGTTATAGAAGGAAGTATTAAAGTTACAACCTTCAGTGGAAGACCAATTCCTAACAAGAAGGTGTATCTTTCAGAAGGTCAACGGTGGTCTCACAAGTTACTACTTACTCTCACTACAGATAGTAATGGATTGGCAAAATTCTCAGTCGCTTCACCTGAACATCCTGCAACAGAGATAACATTGCGGGCAAGTGTCTATCCAGAGGAAGAATACCACGGATACAACATACCATTCTTTTCAACTGCTGATGCACGTATACAGCTGCTCCAACCTGCCACACCTTACAATCCAGTATTCAGTGAACTGTCAATAGAGAGCTCAGAGGAACCCTTTAATTGTGGTGCTGAAATTCCCATAACCATTAACTACTATATTGTTGGGGAAACTACTGAAAATTATAGCATTGATCTTATATACATGGTTTTATCTAAAGGAGCCATAATCCATCATGGTCATGAGAAAGTTGAAGTGAAAGACTCAACAGATGTCAGAAGGGGGAAAATCTCATTCAAACTATCTGTTGTTGCTGAGCTGGCTCCTGTAGTGCAGGTTCTGGCATACTCTGTCCTGCCCAACATCATCGCTGCTAGTAAGAATTTTGAGGTggaaaaatgtttcagaaatcaGGTTTTGCTACAGTTCTCTCCCTCCAAGGCAGTTCCTGGTGAGAAGAACACTCTTGAGCTCTCAGCTCATCCTGGTTCATTGTGTGGCCTCAGTGTTGTAGATCAGAGTGTGTTCATCCTGGATTCTCAGAACCGTCTTAACACAGACAAGATATTTCAACTGTTGCCAGTGACATCTGTGTCAGATTATCCCTATGAAGTTGAAGATGAACTGGCATGCTTGCATGTTCAATTCAGACGAGACGTTAGACCTCCACAGGATGAACAGATTGACCATGCTTACAATACAATAAGGGGAGTGGGGATGAAGATGATAACAAATTTGGGTGTTAGCGAACCTGACTGTTTGGCATACCAGTATGAGAGTCACAGCTTTGTATATTATGaCGACATTATGATGATTGTAAATGATATGATTGAATTTAATGGAGCAGCATCACCAGATTATGAACCTATTGAGACAGTTCGCAAATTCTTTCCAGAAACATGGATATGGCAACTATCTGAAGTGGGAGACTCTGGATTAGTACAGCTTCCTGTCACTGTTCCTGACACCATCACCACTTGGGAGACAGAGGCTTTCTGCGTGTCCTCTAGGGGTCTGGGACTGGCTCCTCCTGTTCAGCTCACTGTATTTCAGCCCTTCTTCCTGGAGCTCTCGTTGCCTTACTCCATTATCCGGGGAGAGATTTTTGAGCTGAAGGCCACTGTCTTCAATTATCTTTCCAAATGCATTATGGTTAAAGTTACTCCAGCCTCTTCCTCGGACTACACTCTGGAACCCTCTTCTGATGGCGAGTATTCATCCTGCCTGTGtgcaaatggaagaaaaacattcaaatgGACCCTTATTCCCACTGTGCTTGGAGTCTTGAAAGTGACAGTGAGTGCAGAGGCAGAACAATCCCAGACTGTGTGTGACAATGAGATTGTGAGTGTTCCAGAGAGGGGCCGTATTGACACAGTTACACGAAGCCTGATTGTACAGGCTGAAGGAACTGAAAAGATGAAGAGCCAGAGCTGGTTATTATGTCCCCATGgCAACAGTGTTTCAGAGCAGTTGGAGTTGACTCTTCCTGAGGATGTAATAGAGGGATCAGCACGAGCTTCTGTTTCAGTACTTGGAGATATACTTGGCCGTGCATTAAAAAATCTAGATGGGCTGCTCCAGATGCCATATGGCTGTGGTGAACAAAACATTGCACTCCTCGCCCCCAATATCTATATTCTTCAGTATCTAGAGAGCACTGAGCAGCTCACCACAGCTATCCGTGAGATGGCTACTGGTTTCCTTAAGAGTGGATACCAAAGGCAActtaattataaacatttaaatggtGCCTACAGCACATTTGGCACGGGAGAGGAGAACACATGGTTAACTGCTTTTGTTTTGAGGACCTTTGGCAAAGCACAACGTTACATCTTTATTGATCCAGAAAGCATTAACAGTGCAAAGCAATGGCTCATAAGTATGCAGAGATCAGACGGCTGTTTTATACGACAGGGAAGTCTGTTCAATAACAGAATGAAGGGTGGTGTAAATGATGATGTTACTATTACTGCTTACATCACTGCGTCATTGCTTGAATTGGACATTACAGTCCAGGATCCTGTTGTGAATAAAGGGTTGCTGTGCTTAAAATCTTCTATTAGTCACCTGACAAACACCTACACCACTGCACTGTTGGCCTACACTTTCAGTCTGGCTGGAGAGAATCAAATTCGAGAGCAGCTACTAAACAAGTTGGATAATGTCGCCATTCGAGGAGATGGTCAGCTTCACTGGTCTCAGTCAGCATCAGATGACTCCAGCGCATTGTCAGTGGAAATCAGCTCCTATGTGCTGCTAGCTGTTCTCACTACAGGTCAAGATACTGCTGCTGATTTGGGATATGCTAATAGGATAGTCAGCTGGCTGGTGAAGCAACAAAATCCCTATGGAGGCTTTTCATCCACTCAGGATACAGTTGTGGCCCTCCAAGCTCTGGCTCTGTACTCCACTAAAGTGTTCAGCTCAGAAGGCTCTAGCGCAGTAACTGTAAAGTCAGAAGATGGACACAGTCACAACTTTGATGTGAACCAGAACAACAAGTTACTGTTCCAAGAAAGTTCATTGCAGGATGTTCCTGGTAAATACAGCATTGAAGTGAAGGGCTCCAGCTGTGTGTCAGTGCAGACAGCACTTTTCTACAATGTTCCCACACCTTCTGAAACCAGTACACTGAGCATCAGGGCTACAACTGaaggaaaatgcacaaaatcacTTGGAGAAACTGTGTTCCTCAAGTTCACCATCAAatatACTGGGACACTAAGCAGCACTAACATGATCATAGTGGACATAAAATTCTTATCAGGGTTCACAGCAGATCCTGGTGAACTGAAAAAAGGCATTTTGGTGGAAAGAGCTGATTCCAAAGATGACTGTATTATCATGTATATCAAAGAGCTCCATAGGAATATTCCTATCAGCTATGAGCTACACATGAAACAGGTGTTTCCTGTCAAGAATTTGAAGCCGGCTGTGATGAAAGTTTATGATTACTACCAAACAAGTGACCAGTCTGAGACGGAGTACACCTCCCCCTGTGTGTCAGGTTTTAAATCTGCATTGAAGATGCAGAAAATCTTTTGTCTATTCGCTCTATCATGGTTTTATTTTCTGATGCAAATATGTTGAAttgttgtttaaataaaaaataccctTCAGATGCCTTATATGTTACTGTTGTGCTGAGGATCTTCACAGTATGATGTTACATGTATAATTTGAACATTCCTTTTAATATATTGATTAAAATTGTACTTAGCCTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263847 lncRNA downstream 633508 9037480 ~ 9043751 (-) True G222852
TU263563 lncRNA downstream 1128885 8544912 ~ 8548374 (-) True G222610
TU263542 lncRNA downstream 1185975 8464576 ~ 8491284 (-) True G222591
TU263531 lncRNA downstream 1271076 8404850 ~ 8406183 (-) False sorl1
TU263469 lncRNA downstream 1435083 8241064 ~ 8242176 (-) True G222522
TU264411 lncRNA upstream 6087 9710434 ~ 9713059 (-) False LOC113532707
XR_004579474.1 lncRNA upstream 53811 9758158 ~ 9758966 (-) True LOC117599042
TU264417 lncRNA upstream 98145 9802492 ~ 9806485 (-) True LOC117599044
TU264418 lncRNA upstream 98597 9802944 ~ 9806485 (-) False LOC117599044
XR_004579476.1 lncRNA upstream 100326 9804673 ~ 9806509 (-) False LOC117599044
XM_026924791.2 mRNA downstream 2813 9664911 ~ 9674446 (-) False nlrx1
XM_026924789.2 mRNA downstream 2814 9664911 ~ 9674445 (-) True nlrx1
XM_026924790.2 mRNA downstream 2815 9664911 ~ 9674444 (-) False nlrx1
XM_026924793.2 mRNA downstream 12625 9655582 ~ 9664634 (-) True pdzd3a
XM_026924787.2 mRNA downstream 29020 9636571 ~ 9648239 (-) False ube4a
XM_034310471.1 mRNA upstream 13398 9717745 ~ 9822687 (-) True LOC117599039
XM_034310470.1 mRNA upstream 118722 9823069 ~ 9835087 (-) True LOC113532826
XM_026924311.2 mRNA upstream 134969 9839316 ~ 9866331 (-) True LOC113532742
XM_026924191.2 mRNA upstream 336395 10040742 ~ 10070727 (-) False ulk2
XM_026924190.2 mRNA upstream 336395 10040742 ~ 10070727 (-) True ulk2
TU263800 other downstream 730360 8941018 ~ 8946899 (-) True G222809
XR_004579456.1 other downstream 2213760 7392415 ~ 7463499 (-) True zgc:77784
trnap-cgg_8 other downstream 2481665 7195523 ~ 7195594 (-) True trnap-cgg_8
TU261846 other downstream 3652948 6021220 ~ 6024311 (-) False dynll2a
TU261738 other downstream 3873381 5797985 ~ 5803878 (-) False LOC113532612
TU264952 other upstream 603713 10308060 ~ 10312487 (-) False LOC113533081
XR_004579509.1 other upstream 3236563 12940910 ~ 13007559 (-) True nf1a
XR_004579489.1 other upstream 3365789 13070136 ~ 13080860 (-) True wsb1
TU267049 other upstream 3663416 13367763 ~ 13368850 (-) True G225622
TU268481 other upstream 6108042 15812389 ~ 15844783 (-) True G226830

Expression Profile