Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579476.1 |
| length | 1244 |
| lncRNA type | intronic |
| GC content | 0.34 |
| exon number | 3 |
| gene id | LOC117599044 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047608.1 |
| NCBI id | CM018554.1 |
| chromosome length | 25848897 |
| location | 9802492 ~ 9806509 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004579474.1 | lncRNA | downstream | 45707 | 9758158 ~ 9758966 (-) | True | LOC117599042 |
| TU264411 | lncRNA | downstream | 91614 | 9710434 ~ 9713059 (-) | False | LOC113532707 |
| TU263847 | lncRNA | downstream | 760922 | 9037480 ~ 9043751 (-) | True | G222852 |
| TU263563 | lncRNA | downstream | 1256299 | 8544912 ~ 8548374 (-) | True | G222610 |
| TU263542 | lncRNA | downstream | 1313389 | 8464576 ~ 8491284 (-) | True | G222591 |
| XR_004579459.1 | lncRNA | upstream | 80507 | 9887016 ~ 9895761 (-) | True | LOC117599021 |
| TU264445 | lncRNA | upstream | 124847 | 9931356 ~ 9978560 (-) | True | G223353 |
| TU264514 | lncRNA | upstream | 229233 | 10035742 ~ 10035982 (-) | True | G223408 |
| TU264516 | lncRNA | upstream | 232335 | 10038844 ~ 10039358 (-) | True | G223410 |
| TU264545 | lncRNA | upstream | 275072 | 10081581 ~ 10082117 (-) | True | G223437 |
| XM_034310469.1 | mRNA | downstream | 93926 | 9677259 ~ 9710747 (-) | False | LOC113532707 |
| XM_034310468.1 | mRNA | downstream | 93927 | 9677259 ~ 9710746 (-) | False | LOC113532707 |
| XM_034310467.1 | mRNA | downstream | 98311 | 9677259 ~ 9706362 (-) | False | LOC113532707 |
| XM_034310466.1 | mRNA | downstream | 100326 | 9677259 ~ 9704347 (-) | False | LOC113532707 |
| XM_026924240.2 | mRNA | downstream | 100749 | 9677259 ~ 9703924 (-) | True | LOC113532707 |
| XM_034310470.1 | mRNA | upstream | 16560 | 9823069 ~ 9835087 (-) | True | LOC113532826 |
| XM_026924311.2 | mRNA | upstream | 32807 | 9839316 ~ 9866331 (-) | True | LOC113532742 |
| XM_026924191.2 | mRNA | upstream | 234233 | 10040742 ~ 10070727 (-) | False | ulk2 |
| XM_026924190.2 | mRNA | upstream | 234233 | 10040742 ~ 10070727 (-) | True | ulk2 |
| XM_026923875.2 | mRNA | upstream | 356898 | 10163407 ~ 10208971 (-) | False | sgsm2 |
| TU263800 | other | downstream | 857774 | 8941018 ~ 8946899 (-) | True | G222809 |
| XR_004579456.1 | other | downstream | 2341174 | 7392415 ~ 7463499 (-) | True | zgc:77784 |
| trnap-cgg_8 | other | downstream | 2609079 | 7195523 ~ 7195594 (-) | True | trnap-cgg_8 |
| TU261846 | other | downstream | 3780362 | 6021220 ~ 6024311 (-) | False | dynll2a |
| TU261738 | other | downstream | 4000795 | 5797985 ~ 5803878 (-) | False | LOC113532612 |
| TU264952 | other | upstream | 501551 | 10308060 ~ 10312487 (-) | False | LOC113533081 |
| XR_004579509.1 | other | upstream | 3134401 | 12940910 ~ 13007559 (-) | True | nf1a |
| XR_004579489.1 | other | upstream | 3263627 | 13070136 ~ 13080860 (-) | True | wsb1 |
| TU267049 | other | upstream | 3561254 | 13367763 ~ 13368850 (-) | True | G225622 |
| TU268481 | other | upstream | 6005880 | 15812389 ~ 15844783 (-) | True | G226830 |
