RNA id: XM_026924926.2


Basic Information

Item Value
RNA id XM_026924926.2
length 490
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC113533081
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 10308050 ~ 10312516 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGTTTGTTCTCTCCTGTACACCATACTTGGCACCTGTTCAAGAGCTCTCTGGTTTATGTGTGCGCGTCCTTGTATGGCCCCACGCTAGACAAGCAGCAGGACGTTTCGCAGAGAACAGTCGAACATGAGACACTTGCTGAGCCTTCAACGAGTGGCCACCAAGGCCTTCAGTACAACAGCCAGGCAGATGAAGAACAGGGTTCCAGAGAAGCAGAAGCTTTTCCAGGAGGACAATGGTCTGCCTGTCCACATCAAAGGGGGAAGCACTGATATGCTACTCTACCGAGTAACCATGACCCTTACTATTGTTGGCACTGGATTTTCCTGTTACTGGCTTCTGGTGGCCTCGATGCCCAGACGCAAAGCTGATTAAGAAGAGGCTCTGAAAGAACTGTTCATGTGTCATATGAATTCAGTTAAAATAACTTTCATGTTGTACAGACAATTCTGATTAAAGAACATCTtgatgtatagtgtgtataaaataaa

Function

GO:

id name namespace
GO:0005746 mitochondrial respirasome cellular_component
GO:0009055 electron transfer activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264865 lncRNA downstream 144678 10161783 ~ 10163372 (-) True G223676
TU264564 lncRNA downstream 206884 10100959 ~ 10101166 (-) True G223449
TU264558 lncRNA downstream 218060 10089643 ~ 10089990 (-) True G223443
TU264545 lncRNA downstream 225933 10081581 ~ 10082117 (-) True G223437
TU264516 lncRNA downstream 268692 10038844 ~ 10039358 (-) True G223410
TU264978 lncRNA upstream 99940 10412456 ~ 10412680 (-) True G223766
TU265027 lncRNA upstream 247910 10560426 ~ 10611848 (-) True G223808
TU265054 lncRNA upstream 323640 10636156 ~ 10636794 (-) True G223827
TU265074 lncRNA upstream 395736 10708252 ~ 10712073 (-) False appbp2
TU265085 lncRNA upstream 443982 10756498 ~ 10761733 (-) True G223855
XM_026923881.2 mRNA downstream 89679 10211586 ~ 10218371 (-) True tnfaip1
XM_026923875.2 mRNA downstream 99079 10163407 ~ 10208971 (-) False sgsm2
XM_026923876.2 mRNA downstream 99079 10163407 ~ 10208971 (-) False sgsm2
XM_026923874.2 mRNA downstream 99079 10163407 ~ 10208971 (-) True sgsm2
XM_026924191.2 mRNA downstream 237323 10040742 ~ 10070727 (-) False ulk2
XM_026924107.2 mRNA upstream 8315 10320831 ~ 10342884 (-) True supt5h
XM_026924110.2 mRNA upstream 8315 10320831 ~ 10342883 (-) False supt5h
XM_026924108.2 mRNA upstream 8315 10320831 ~ 10342883 (-) False supt5h
XM_026924111.2 mRNA upstream 8549 10321065 ~ 10342884 (-) False supt5h
XM_034310568.1 mRNA upstream 13671 10326187 ~ 10342885 (-) False supt5h
TU263800 other downstream 1361151 8941018 ~ 8946899 (-) True G222809
XR_004579456.1 other downstream 2844551 7392415 ~ 7463499 (-) True zgc:77784
trnap-cgg_8 other downstream 3112456 7195523 ~ 7195594 (-) True trnap-cgg_8
TU261846 other downstream 4283739 6021220 ~ 6024311 (-) False dynll2a
TU261738 other downstream 4504172 5797985 ~ 5803878 (-) False LOC113532612
XR_004579509.1 other upstream 2628394 12940910 ~ 13007559 (-) True nf1a
XR_004579489.1 other upstream 2757620 13070136 ~ 13080860 (-) True wsb1
TU267049 other upstream 3055247 13367763 ~ 13368850 (-) True G225622
TU268481 other upstream 5499873 15812389 ~ 15844783 (-) True G226830
TU268676 other upstream 5806781 16119297 ~ 16165036 (-) False G226991

Expression Profile