RNA id: XM_034310890.1


Basic Information

Item Value
RNA id XM_034310890.1
length 2130
RNA type mRNA
GC content 0.44
exon number 7
gene id aipl1
representative False

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 11188250 ~ 11220656 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCGGGAGGAGATGTGAACGCGGAGAAGACGGACACactgagggagagacagactAATGGAGCAATCTTATTTAATCCTGTTAATCACAAGGCAACACTTCAGACTTTAATACTCACCTATACAGTGCAACCATACTTGTCTGGAAACAATTGCCTCTACATATATACAACATGGTGGACAGTCTGCTGCTTGGAGTGGAGGGAATCAAAAAAACTATCTTGTATGGAGGAACCAGTGAGATTCCCAAATTCATCACAGGATCCAAGGTGACTTTCCATTTCCGAACCATGCTGTGCAATGACGATCGCACGGTGCTGGACGACAGTAAGAAGGTCGGGGTGCCAATGGAAGTGGTGATCGGGAACATGTTCAAGCTGGATGTATGGGAGACTCTGCTCAAGTCCATGCGCATAGGAGAAGTTGCAGAGTTCTGGTGTGACATAATTCACACTGGCCTGTATCCCATGGTGGCAAAAAGTCTTCGGCGCATTGCAGAGGGAAAAGATCCAGTGGACTGGCATATCCACACCTGTGGCATGGCTAATATGTTTGCGTTTCACACGCTGGGTTACGATGACCTGGATGAGCTCCAGAAAGAACCCCAGCCTCTCATCTTTGTGCTAGAACTGCTAAAGGTTCAGCAGCCAAGTGAGTATCACAGGGAGTCGTGGGCGATGAATGATGAGGAGAGACTAAAGGCTGTTCCTGTGCTCCATGGCCAAGGGAACAAACTGTACAAACAGGGTCGCTTTGAGGAGGCCACAAACAAGTACAAGGAGGCAATCCTTTGCATCAAGAATGTTCAGTCAAAGgAAAAGGCCTGGGAGGTCCCCTGGCTAAAGCTTGAGAAAACGGCCAATACTCTCACACTCAACTACTGCCAGTGTCTGCTGCGCATGCAGGAGTATTACGAGGTCATTGAGCACaccagtgacatcatcaaccaGCATCCTGGCGTGATGAAAGCTTTCTACCTGCGGGGAAAAGCACACACAGAGGTGTGGAATGAAGCTGAGGCTAAGGCTGACTTTCAGAGGGTGCTGGATCTAGACCCAAATATGAAGAAGTCAGTGAAGAAAGAGCTAGCTGTTCTCAACATGCGTatggaggagaagagagaggaggacaGACAAAAATACAAGGGCATGTTCACAGCGACAGGAACAGGGcaaacaagtccaggacaaacACAGGAACAGGGGAATACGGACCAAGAAACAGCAGAACAATCAACTACTGACCAAGAACCTTCCAAGCAAGTGGCTCTAGAGCAAGCACCTACACAACAAGAAACATCATTGAAGGAAACTCCAGATAAAGACACTCTAGAGCAGGAAACTCCAGAGGCAAACAATCCAGACGGGAAAACAACAGAGGAAGAAACTTCAGAGCAGGAAACTCCAGAGAAGAAAACACTAGAGCAAGAAACTCTAGAGCAAGAAATTGCAAATAATAAATCTCCAGTGTTAGCAACTTCAGAGCAGGAAGCTGTAGAGAATGAAACTCTAGAGAATGAAACTTCAGAGCAGGAAACTCTAGAGAATGAAACTCCAGAGCAGGAAACTCTAGAGAATGAAACTCCAGAGCAGGCAACTCTAGAGAATGAAACTCCAGAGCAGGAAACTCTAGAGAATGAAACTCCAGAGCAGGAAACTCTAGAGAATGAAACTCCAGAGCAGGAAACTCTAGAGAATGAAACTTCAGAGAAAGAAACTTCAGAGCAGGAAATTCTAGAGAATGAAACTCTAGAGAAAGAAACTTCAGAGCAGTTACTCCTGTAAAGGAATTGCAGGACAAGAAAATACATCACAGTTAACCTCAACTGTTGCACAAACACCTGCTGAAAAACAGACACCAGAACACCACAAATAATGACTGCAGTCAGTGATGAAGATGCTTAATGAAACAGTCTAACAGCCATTTGCTCCATTTGATCCCCATTATTGGAATTTATCTAATTTATTAGGGTATGAAATGAACATATTGCTTAACTTTCAGGGGTGATTAAAATGGTGTCTGATATTTGAtaaaatatagtgaatataataaaaataatataataaaaatataatagaataatacTATGGCATAATATTTAGATTAATGATTTTTCATCAGTGAAATTTTGGG

Function

GO:

id name namespace
GO:0006457 protein folding biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265556 lncRNA downstream 19582 11105571 ~ 11168668 (-) True G224287
TU265558 lncRNA downstream 19582 11163879 ~ 11168668 (-) False G224287
TU265557 lncRNA downstream 40492 11105571 ~ 11147758 (-) False G224287
TU265332 lncRNA downstream 118292 11069684 ~ 11069958 (-) True G224086
TU265085 lncRNA downstream 426517 10756498 ~ 10761733 (-) True G223855
TU265646 lncRNA upstream 174073 11394720 ~ 11397828 (-) True G224358
TU265648 lncRNA upstream 202914 11423561 ~ 11423868 (-) True G224360
TU265649 lncRNA upstream 203982 11424629 ~ 11424859 (-) True G224361
TU265658 lncRNA upstream 243601 11464248 ~ 11464691 (-) True G224370
TU265659 lncRNA upstream 245306 11465953 ~ 11466243 (-) True G224371
XM_034310460.1 mRNA downstream 2731 11174002 ~ 11185519 (-) False trarg1a
XM_026924021.2 mRNA downstream 3384 11174002 ~ 11184866 (-) True trarg1a
XM_026924318.2 mRNA downstream 120022 11064601 ~ 11068228 (-) True tmem199
XM_026924212.2 mRNA downstream 164920 11017152 ~ 11023330 (-) True gemin4
XM_026923928.2 mRNA downstream 350122 10826289 ~ 10838128 (-) True pipox
XM_026924962.2 mRNA upstream 14993 11235640 ~ 11243992 (-) True abhd15a
XM_026924944.2 mRNA upstream 53116 11273763 ~ 11279974 (-) True exo5
XM_034310378.1 mRNA upstream 60684 11281331 ~ 11284623 (-) False rflnb
XM_034310377.1 mRNA upstream 60684 11281331 ~ 11284622 (-) True rflnb
XM_026924605.2 mRNA upstream 66958 11287605 ~ 11308511 (-) True vps53
TU264952 other downstream 875763 10308060 ~ 10312487 (-) False LOC113533081
TU263800 other downstream 2241351 8941018 ~ 8946899 (-) True G222809
XR_004579456.1 other downstream 3724751 7392415 ~ 7463499 (-) True zgc:77784
trnap-cgg_8 other downstream 3992656 7195523 ~ 7195594 (-) True trnap-cgg_8
TU261846 other downstream 5163939 6021220 ~ 6024311 (-) False dynll2a
XR_004579509.1 other upstream 1720263 12940910 ~ 13007559 (-) True nf1a
XR_004579489.1 other upstream 1849489 13070136 ~ 13080860 (-) True wsb1
TU267049 other upstream 2147116 13367763 ~ 13368850 (-) True G225622
TU268481 other upstream 4591742 15812389 ~ 15844783 (-) True G226830
TU268676 other upstream 4898650 16119297 ~ 16165036 (-) False G226991

Expression Profile