RNA id: XM_026924234.2


Basic Information

Item Value
RNA id XM_026924234.2
length 2866
RNA type mRNA
GC content 0.55
exon number 24
gene id bcas3
representative False

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 12435206 ~ 12638725 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTAAGGCGCGCTCATTGGTTGCTACATTTGTTGTTTCCGCTATACGTAATCCCATGTTTTCATCGCGTCTtggaaagagctctggttagtTAGCGGAATTCAAGCACAACGCACCTGGATACACAGCGGTCAATGATGGCGTCCGACTCCCCGCGCAGGCCGAGCCGCTGTGCTGGAGGGGTTGTTGTTCGAGCCCAGGCTGCTACGGAGCAGTCTTACATGGAAAGTGTAGTGACTTTTTTGCAAGATGTGGTCCCTCAGgCCTACACTGGGACACCTCCtacagatgaaaaagaaaagatcatTTGGGTTCGGTTTGAAAAAGCAGACGTCAATGACGTGGCCCGCTCGCCAGAGTTCCTGGAGATGCATGGCAGTGGTGTGGACCCGCCTCTTTGTCTGATGATTGGCTATGCAGACGGAATGCAAATCTGGAGTGTATCActgACTGGAGAAGCTCAGGAGCTCTTCTCTGTGCGGCACGGTCCAGTGCGAGCTGCTCGTATCCTCCCAGCCCCTCATATCAGTCCCCTGAACACTGACAGCTTTGCCGAGAAACGGCCCCTCCTCGGTGTTTGCAAGAGCGCAGGCTCCTCGGGGACCAGCCCTCCATACTGCTGCGTAGACCTGTATTCTCTAAGGACGGGAGAGATGGTCAAGTCAATTCAGTTTAAAACCCCTATTTATGATCTACACTGCAACAAAAGAATTCTTGTCGTTAGTCTTCAAGAAAAGATTGCCGCCTTTGACAGCTGCACTTTTACGAAAAAATTCTTTGTCACTAGCTGCTATCCTTGTCCTGGTCCCAATCTCAACCCAATAGCATTAGGAAGCCGGTGGCTGGCCTACGCTGAGAACAAGctGATCCGGTGTCATCAGTCCCGTGGCGGGGCATGTGGAGATAACTCCCAGTCCTACACTGCCACTGTCATCAGTGCTGCAAAAACACTAAAGACAGGGCTGACTATGGTGGGTAAAGTAGTCACCCAGCTTACAGGCACACTGCCCTCTGGAGCACCTGATGAAGAGAGCGCGGCCCACAGCAGCACCCGCCGCAGCCCTCACCAACCCGGTGTGGTTACTgtcatagacacacacactgtgggaGAGGGAcagGTACTTGTAAGTGAAGACTCTGATGGAGAGGGAGTGGTCGCTCATTTTCCAGCTCATGATAAACCCATATCCTGTATGGCATTCAACCCGAGTGGTATGTTGCTGGTGACTGCTGACACATTAGGGCATGATTTTCATGTGTTTCAAATCCTCACTCACCCGTGGGCATCGTCGCAGAGTGCGGTTCATCACCTGTACACCCTGCACAGAGGAGAAACTGAGGCCAAGGTGCAGGACATCTGCTTCAGCCCTGACTGCCGCTGGGTGGTGGTCAGCACGTTGCGTGGCACCTCACATGTCTTCCCCATTAACCCGTATGGTGGTGCACCATGTGCCCGCACACACCTGTCCCCACGTGTTGTGAACCGCGTGAGCCGCTTTCAGAAGAGCGCAGGCCTCGAGGAAATCGAGCAGGAGCTGAACAGCAAGCAGGGCGGCCGCTGCAGCCCCATCGCCGGCCTTTCCAGCAGCCCCTCCGGCTCCCCTCTACAcgccaaacTTACCAACCAAGAGTCCTATAACAACTTCACCAACAACAACATGGGGAATCCGCGGCTGTCCCCTCTGCCAAGCCTAACGGTGGTGCTGCCGCTGGCTCAGATTAAACAGCCCATGACTCTGGGCACCATCACTAAGCGCACAGGTAAAGCCAAGCCACCTCCCCAGATCTCTCCTAGCAAGTCTATTGGAGGGGAGTTCTGTGTAGCTGCCGTGTTTGCATCTTCACGCTCTTGGTTCATCACCAACCCTaacatgaagagagaaaaagATCAGTCTCGCCAGGCCGTGGTTGACTCTCTCTACATCGCAAGCTGCTATGGTAATCTGGTTGAGCATGTGCTGGAGCCTCGGCCAATCAGCACAGCACAGAAGATAGGTGATGACACACCTCTGGAGTTAAACACCTGCCCCAGGGCATGCTGGACTCTGGCCAGAACGCCGCAGTGGAATGAGCTGCAACCTCCTTTCAGCAGCAGCCACCCCTTGGTGCAGGCCTCAGACTTGGTGCAGTACTATCAGTACCTCCTGGCTGGCTTGTTGCCTCCAGGAAGCCCGGGGCCCATCACCAGGCAGGGTTCCTATGACAGCCTGGCCTCGGACCACAGCAGCCAGGAGGATGAGGAGTGGCTCTCTCAGGTGGAGATAGTGACACACACTGGCCCTCACAGGCGGTTGTGGATGGGTCCTCAGTTCCAGTTTAAGACCATTCACCCATCAGGCCAGACCACGGTCATCTCCTCCAGCTCGTCTGTGCTGCAGTCCCAGGGGCCCAGTGATACCCAGCAGCCCCTGCTCGACTTTGATACTGATGACTTGGAACTACACAGCCTCAGgATCCAGCCTGTGCGCTCTGAGCCTATGACCATGCCCGGCTCCTCTTGTCTGATTCCAGAGCGTGTAGGCCAGGCTACAGTCATCGATACCGGCTCAGgcacaTTTGACCACAGTGTGACCCTGCTGGAGGTGTGTGGCAGCTGGCCCGAGAGTTTTGGCTTGCGTCACATGTCCTCTGTGGATGCCACAGATGAGGGCTTGAGGGAGAGGCTTGCTGAAGCCATGTCTGAATCACCCAGCAGAGACATTGTAGGCTCTGGAACAGAACTGCAGAGAGAAGGCAGTATCGAGACGCTGAGTAACAGCTCGGGCTCCACAAGTGGCAGCATTCCTCGTAACTTTGAAGGTTACCGCTCTCCTCTGCCCACCAACGAGAGCCAGCCGCTCAGCCTTTACCCCACAGCTTTCCCCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266565 lncRNA downstream 1481 12435447 ~ 12436068 (-) False bcas3
TU266317 lncRNA downstream 47916 12389252 ~ 12389633 (-) False tbx4
TU266315 lncRNA downstream 75456 12360206 ~ 12362093 (-) True G224970
TU266054 lncRNA downstream 356470 12080300 ~ 12081079 (-) True G224746
TU266008 lncRNA downstream 461531 11973919 ~ 11976018 (-) True G224701
TU266661 lncRNA upstream 67971 12706696 ~ 12707375 (-) True G225291
TU266669 lncRNA upstream 282249 12920974 ~ 12999031 (-) False akap1b
TU266798 lncRNA upstream 430061 13068786 ~ 13162208 (-) False G225410
TU266799 lncRNA upstream 430061 13068786 ~ 13175992 (-) True G225410
TU267043 lncRNA upstream 720085 13358810 ~ 13359021 (-) True G225619
XM_026924265.2 mRNA downstream 10341 12419364 ~ 12427208 (-) True tbx2b
XM_026924629.2 mRNA downstream 30060 12388866 ~ 12407489 (-) False tbx4
XM_026924628.2 mRNA downstream 32290 12388866 ~ 12405259 (-) True tbx4
XM_034310737.1 mRNA downstream 129287 12293635 ~ 12308262 (-) False ccdc9
XM_034310545.1 mRNA upstream 40682 12679407 ~ 12910854 (-) False msi2b
XM_026924104.2 mRNA upstream 40682 12679407 ~ 12910854 (-) False msi2b
XM_026924103.2 mRNA upstream 40682 12679407 ~ 12910853 (-) False msi2b
XM_026924101.2 mRNA upstream 40682 12679407 ~ 12910853 (-) False msi2b
XM_026924102.2 mRNA upstream 40682 12679407 ~ 12910853 (-) True msi2b
TU264952 other downstream 2125062 10308060 ~ 10312487 (-) False LOC113533081
TU263800 other downstream 3490650 8941018 ~ 8946899 (-) True G222809
XR_004579456.1 other downstream 4974050 7392415 ~ 7463499 (-) True zgc:77784
trnap-cgg_8 other downstream 5241955 7195523 ~ 7195594 (-) True trnap-cgg_8
TU261846 other downstream 6413238 6021220 ~ 6024311 (-) False dynll2a
XR_004579509.1 other upstream 302185 12940910 ~ 13007559 (-) True nf1a
XR_004579489.1 other upstream 431411 13070136 ~ 13080860 (-) True wsb1
TU267049 other upstream 729038 13367763 ~ 13368850 (-) True G225622
TU268481 other upstream 3173664 15812389 ~ 15844783 (-) True G226830
TU268676 other upstream 3480572 16119297 ~ 16165036 (-) False G226991

Expression Profile