RNA id: TU266669


Basic Information

Item Value
RNA id TU266669
length 565
lncRNA type read_through
GC content 0.33
exon number 2
gene id akap1b
representative False

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 12920963 ~ 12999031 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTTTTATGTGCTTACTGTGATGTTAAAAAGTCTTAAGAGAGTCCTTCTTACTTACTCACTTCTTTAGTTCTGTCTCAGTTCCATCAGTTTAATTTGCTGTCTTCTGACATTTATTGTCttggaaagtttttttgttttttttcttTGTAAGTTCATAATTACCCAGTAGATTTCTGACCATTTGTTCTTTTATCAGTGCTCGAAGTTCATGGCCTTCTCTTCTCAACCTTTTCCAATGCCATGCTTCATCTATCCATCATACTTCACTTGTCCATgtctgtgtaaataaaatttcactGTTCTTTTGTACTGGGAAAAGTGTATGAAAACAAAgggatcatgtttttttttttttcttccacccCAACCACATGTTCTGTTTATAGGACTGGTTTGAAGTGTTTTGCTTAGCTAGTTGATTAATTCTTTGATTATTTGAGTGCAAAGCAATCCTGCCCACAGCATAACCATGTACAGGTCAGTTTTTGCTAGACTCAGAAAAGGTTTGAATCTCGGTTGTAcagatctatatatatataaatatatataaaagagaataaaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266661 lncRNA downstream 213599 12706696 ~ 12707375 (-) True G225291
TU266565 lncRNA downstream 484906 12435447 ~ 12436068 (-) False bcas3
TU266317 lncRNA downstream 531341 12389252 ~ 12389633 (-) False tbx4
TU266315 lncRNA downstream 558881 12360206 ~ 12362093 (-) True G224970
TU266054 lncRNA downstream 839895 12080300 ~ 12081079 (-) True G224746
TU266798 lncRNA upstream 69755 13068786 ~ 13162208 (-) False G225410
TU266799 lncRNA upstream 69755 13068786 ~ 13175992 (-) True G225410
TU267043 lncRNA upstream 359779 13358810 ~ 13359021 (-) True G225619
TU267045 lncRNA upstream 365372 13364403 ~ 13364617 (-) False G225621
TU267046 lncRNA upstream 365372 13364403 ~ 13366491 (-) True G225621
XM_034310545.1 mRNA downstream 10120 12679407 ~ 12910854 (-) False msi2b
XM_026924104.2 mRNA downstream 10120 12679407 ~ 12910854 (-) False msi2b
XM_026924103.2 mRNA downstream 10121 12679407 ~ 12910853 (-) False msi2b
XM_026924101.2 mRNA downstream 10121 12679407 ~ 12910853 (-) False msi2b
XM_026924102.2 mRNA downstream 10121 12679407 ~ 12910853 (-) True msi2b
XM_026924603.2 mRNA upstream 10408 13009439 ~ 13013119 (-) True LOC113532897
XM_026924602.2 mRNA upstream 18026 13017057 ~ 13023215 (-) True LOC113532896
XM_026924257.2 mRNA upstream 26847 13025878 ~ 13061751 (-) False ksr1b
XM_026924256.2 mRNA upstream 26847 13025878 ~ 13061751 (-) True ksr1b
XM_026924258.2 mRNA upstream 26847 13025878 ~ 13046227 (-) False ksr1b
TU264952 other downstream 2608487 10308060 ~ 10312487 (-) False LOC113533081
TU263800 other downstream 3974075 8941018 ~ 8946899 (-) True G222809
XR_004579456.1 other downstream 5457475 7392415 ~ 7463499 (-) True zgc:77784
trnap-cgg_8 other downstream 5725380 7195523 ~ 7195594 (-) True trnap-cgg_8
TU261846 other downstream 6896663 6021220 ~ 6024311 (-) False dynll2a
XR_004579489.1 other upstream 71105 13070136 ~ 13080860 (-) True wsb1
TU267049 other upstream 368732 13367763 ~ 13368850 (-) True G225622
TU268481 other upstream 2813358 15812389 ~ 15844783 (-) True G226830
TU268676 other upstream 3120266 16119297 ~ 16165036 (-) False G226991
TU268923 other upstream 3317620 16316651 ~ 16317345 (-) True G227205

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU5353 True 1786 TUCP 0.50 3 NC_053112.1 12792805 ~ 12796367 (+)
mexican tetra (Astyanax mexicanus) TU5353 True 3890 lncRNA 0.40 2 NC_035897.1 15182402 ~ 15186394 (-)