RNA id: TU267046


Basic Information

Item Value
RNA id TU267046
length 2089
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G225621
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 13364403 ~ 13366491 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tactttggatcatgagctgttcctttctttcgccatacctttctcttcccatcattctggtgcAAGTTAATcctggtttcatcagtccaaagaatcttattccagaacatgggaggcttttttagatgttttctggcaaagtctaatctggctttcctgttcttgaatgttaccagtggtttgcaccttgttgtaaaccctctgtatctacattcatgaaggcgtctcttgattgtagattttgacaatgacacgcctaccttctccagagtattcttaacttctgttgatgttgtgaaggggtttttccttcaccaaggaaaggattctgcaatcatccactttagttggcttccgtggtcttccaggcctttcgatgttgttgagctcaccagtgctttctttctttttagaaTGTACTCAACTGTTGATTTGCCTACGcctaaggtttttgctgtctctcttatagatttatgttgttttttcagcctaatgatggcctccttcacttgcattgcgatctccttggacttcatattgctagctccagtcgaacagctgccaaatgccaactcaatacctgatatcaactccagaccttttatctgcttcatttgtcttgaagtaatgaggaaatggactgcacctggtcaattaacttcttgtcagacaattgtccaaatacctttgagcccctgaaaatggaagtacttttcttaaaatggctgtaattcctcaatggtaaatgccatatttttgtggaacctcttaaaaaaaaaactgaaagtctacactttgatcacatcttgattgttttatttcaaatccattgtggtggtgtataaaggcaaaatgacaaaaactctttcattcatagtccagctgtttattattaaattgtgCTACATGTTCTTGTTTATATGTGCCGGTGATCTTGTGACAATTAAATACTGGTTTCTGCTTTATAAAATGACTCTCATGTGCATTCCCAGTGGCCATTACTTTATAATCACAGTCACTTCCGTATGAGTcacaacatatatattttagtaaACTTCAGCAATactaaatatcatgatacatgtCATGAAAACGTCTTCAACTATCATGATACATAACTCCATATATCTAGAGCCATGGTTCTCAAACAGGGGTCTGGGAACTCCCAGGAGTACGTGAAGCACAGCCAGCATGTcctcctttaataaataatcttgTTATAGTGGTGGAAATCATAACCAACCATTATcgttgttattataattattacatatatgtaataatcatatattacaTATGTTATATTATAATGAGCTCTTACAGTTATTAGTCTGTTTGTCTAAACTTCAATAACTAAAAAACAAGTAAGCctataaataaagtcaataacATTTAATGGTAATTTTGATTAGGGATTTAAAATGGGTTAAAAGTGAAAGATTCACAAataaaagctctatggctccaataaataatcaaaataatcattGCACACATTAAATAATGAGCTTAATATTTGATTAGTTGGACTGCCTTCATAAACAGCCATCCATCCTTCCTTAAAGAGGTATGTGAACAGTGTGAGAAGCCCTTATCTAGAGGACACTGGAGAAAGTGACCCTGGCTGGCTGCTTTCCTCACCTGCTGGGCTTGAAGCGAGCTGGAGCTTTAATGAGCCACAGCTCAGtgttttctcctctctccaacacacacttctcactgcAGCTGTACTGAAGAGGCACAAAGTCTGCAGGACACTCGTATCTAGAACCTGCAAACAAGTGCAAGTGAAAACCAGCCTTTTCTGAGTCCTGAATACTGTCATGATCTTCAGTCAGAAAGAGCTCTAAAGGTAAACACTGTAAGGCAGCTTTCTGCTCAGCACTCacctctcttttccttttcctgtgAACTGGATGAAGATATGTTCTGCGACATACTGAACCAGCAGCACGCTTACAATAGCTATAGCAggacaaaacaggaaaaatagaATCTGTCACTTCACTAAATTAGATATAAACGTAACAACATCGAGGCACGAGAAGCACATGGGGTGTACAACCAACTTTGACCCGGAAGTACTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267043 lncRNA downstream 5382 13358810 ~ 13359021 (-) True G225619
TU266799 lncRNA downstream 188411 13068786 ~ 13175992 (-) True G225410
TU266798 lncRNA downstream 202195 13068786 ~ 13162208 (-) False G225410
TU266669 lncRNA downstream 365372 12920974 ~ 12999031 (-) False akap1b
TU266661 lncRNA downstream 657028 12706696 ~ 12707375 (-) True G225291
TU267080 lncRNA upstream 102786 13469277 ~ 13470023 (-) True G225652
XR_004579537.1 lncRNA upstream 292474 13658965 ~ 13728334 (-) True LOC117599099
TU267247 lncRNA upstream 427741 13794232 ~ 13795138 (-) True G225789
TU267249 lncRNA upstream 438578 13805069 ~ 13805447 (-) True G225791
TU267276 lncRNA upstream 574513 13941004 ~ 13941218 (-) False or121-1
XM_026924387.2 mRNA downstream 70577 13271957 ~ 13293826 (-) False gipr
XM_026924388.2 mRNA downstream 70577 13271957 ~ 13293826 (-) True gipr
XM_026924389.2 mRNA downstream 76688 13271957 ~ 13287715 (-) False gipr
XM_034310755.1 mRNA downstream 119341 13227560 ~ 13245062 (-) True clip3
XM_026924194.2 mRNA upstream 13167 13379658 ~ 13426867 (-) True nova2
XM_026924964.2 mRNA upstream 152246 13518737 ~ 13542214 (-) True ankrd13b
XM_026924965.2 mRNA upstream 153988 13520479 ~ 13542215 (-) False ankrd13b
XM_026924734.2 mRNA upstream 204593 13571084 ~ 13588209 (-) False map4l
XM_026924735.2 mRNA upstream 204593 13571084 ~ 13588209 (-) False map4l
XR_004579489.1 other downstream 283543 13070136 ~ 13080860 (-) True wsb1
XR_004579509.1 other downstream 356844 12940910 ~ 13007559 (-) True nf1a
TU264952 other downstream 3051916 10308060 ~ 10312487 (-) False LOC113533081
TU263800 other downstream 4417504 8941018 ~ 8946899 (-) True G222809
XR_004579456.1 other downstream 5900904 7392415 ~ 7463499 (-) True zgc:77784
TU267049 other upstream 1272 13367763 ~ 13368850 (-) True G225622
TU268481 other upstream 2445898 15812389 ~ 15844783 (-) True G226830
TU268676 other upstream 2752806 16119297 ~ 16165036 (-) False G226991
TU268923 other upstream 2950160 16316651 ~ 16317345 (-) True G227205
TU268927 other upstream 2996890 16363381 ~ 16364304 (-) False si:dkey-118k5.3

Expression Profile