RNA id: TU269003


Basic Information

Item Value
RNA id TU269003
length 215
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G227281
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 16556685 ~ 16556899 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACTAGGCAGTTAAAGTGAATAAATCATgctaatgaatgtggtctttctttgtcccacgagcttcatatctgaccactcatGCCTGGATTAAAGTAAAACCTCCTATTTGCATCTGCATTTGCTTCTGTTTTGAACACATTCATTCTGTTCATTCAgaatatgtattcatattcagttacagcCTTACTTTATGCACACATGATTTAGCTTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268985 lncRNA downstream 15624 16540855 ~ 16541061 (-) True G227263
TU268978 lncRNA downstream 21444 16534773 ~ 16535241 (-) True G227256
TU268955 lncRNA downstream 92549 16463936 ~ 16464136 (-) True G227233
TU268928 lncRNA downstream 118298 16358336 ~ 16438387 (-) False G227210
TU268929 lncRNA downstream 118298 16437540 ~ 16438387 (-) True G227210
TU269008 lncRNA upstream 4106 16561005 ~ 16561214 (-) True G227286
TU269010 lncRNA upstream 6589 16563488 ~ 16563694 (-) True G227288
TU269013 lncRNA upstream 9606 16566505 ~ 16566710 (-) True G227291
TU269018 lncRNA upstream 17057 16573956 ~ 16574192 (-) True G227296
TU269041 lncRNA upstream 86961 16643860 ~ 16644085 (-) True G227319
XM_026934888.2 mRNA downstream 32043 16520890 ~ 16524642 (-) True crybb1l3
XM_026935154.2 mRNA downstream 38134 16501564 ~ 16518551 (-) True unc119a
XM_026934605.2 mRNA downstream 77038 16475496 ~ 16479647 (-) False slc46a1
XM_026934603.2 mRNA downstream 77040 16474935 ~ 16479645 (-) True slc46a1
XM_026934741.2 mRNA downstream 90817 16460186 ~ 16465868 (-) True vtna
XM_026935156.2 mRNA upstream 296280 16853179 ~ 16857519 (-) True tspan13a
XM_026935128.2 mRNA upstream 308283 16865182 ~ 16878741 (-) False LOC113539389
XM_034310650.1 mRNA upstream 308283 16865182 ~ 16876332 (-) False LOC113539389
XM_034310651.1 mRNA upstream 308283 16865182 ~ 16876332 (-) False LOC113539389
XM_034310649.1 mRNA upstream 308283 16865182 ~ 16875333 (-) True LOC113539389
TU268927 other downstream 192381 16363381 ~ 16364304 (-) False si:dkey-118k5.3
TU268923 other downstream 239340 16316651 ~ 16317345 (-) True G227205
TU268676 other downstream 391649 16119297 ~ 16165036 (-) False G226991
TU268481 other downstream 711902 15812389 ~ 15844783 (-) True G226830
TU267049 other downstream 3187835 13367763 ~ 13368850 (-) True G225622
XR_003403925.1 other upstream 2657860 19214759 ~ 19214923 (-) True LOC113539409
TU270720 other upstream 3151416 19708315 ~ 19708841 (-) True G228758
trnae-cuc_28 other upstream 4794344 21351243 ~ 21351314 (-) True trnae-cuc_28
XR_004579494.1 other upstream 5194236 21751135 ~ 21811084 (-) True gdpd5b
XR_004579495.1 other upstream 5194236 21751135 ~ 21811083 (-) False gdpd5b

Expression Profile