Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579542.1 |
| length | 433 |
| lncRNA type | inter_gene |
| GC content | 0.47 |
| exon number | 2 |
| gene id | LOC117599111 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047608.1 |
| NCBI id | CM018554.1 |
| chromosome length | 25848897 |
| location | 16717249 ~ 16723192 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU269041 | lncRNA | downstream | 73165 | 16643860 ~ 16644085 (-) | True | G227319 |
| TU269018 | lncRNA | downstream | 143058 | 16573956 ~ 16574192 (-) | True | G227296 |
| TU269013 | lncRNA | downstream | 150540 | 16566505 ~ 16566710 (-) | True | G227291 |
| TU269010 | lncRNA | downstream | 153556 | 16563488 ~ 16563694 (-) | True | G227288 |
| TU269008 | lncRNA | downstream | 156036 | 16561005 ~ 16561214 (-) | True | G227286 |
| TU269142 | lncRNA | upstream | 52662 | 16774853 ~ 16775075 (-) | True | G227405 |
| TU269180 | lncRNA | upstream | 190768 | 16912959 ~ 16913160 (-) | True | G227440 |
| TU269369 | lncRNA | upstream | 439320 | 17161511 ~ 17163585 (-) | True | G227589 |
| TU269401 | lncRNA | upstream | 516936 | 17239127 ~ 17239928 (-) | False | LOC113539242 |
| TU269426 | lncRNA | upstream | 564152 | 17286343 ~ 17307724 (-) | True | G227640 |
| XM_026934888.2 | mRNA | downstream | 192608 | 16520890 ~ 16524642 (-) | True | crybb1l3 |
| XM_026935154.2 | mRNA | downstream | 198699 | 16501564 ~ 16518551 (-) | True | unc119a |
| XM_026934605.2 | mRNA | downstream | 237603 | 16475496 ~ 16479647 (-) | False | slc46a1 |
| XM_026934603.2 | mRNA | downstream | 237605 | 16474935 ~ 16479645 (-) | True | slc46a1 |
| XM_026934741.2 | mRNA | downstream | 251382 | 16460186 ~ 16465868 (-) | True | vtna |
| XM_026935156.2 | mRNA | upstream | 130988 | 16853179 ~ 16857519 (-) | True | tspan13a |
| XM_026935128.2 | mRNA | upstream | 142991 | 16865182 ~ 16878741 (-) | False | LOC113539389 |
| XM_034310650.1 | mRNA | upstream | 142991 | 16865182 ~ 16876332 (-) | False | LOC113539389 |
| XM_034310651.1 | mRNA | upstream | 142991 | 16865182 ~ 16876332 (-) | False | LOC113539389 |
| XM_034310649.1 | mRNA | upstream | 142991 | 16865182 ~ 16875333 (-) | True | LOC113539389 |
| TU268927 | other | downstream | 352946 | 16363381 ~ 16364304 (-) | False | si:dkey-118k5.3 |
| TU268923 | other | downstream | 399905 | 16316651 ~ 16317345 (-) | True | G227205 |
| TU268676 | other | downstream | 552214 | 16119297 ~ 16165036 (-) | False | G226991 |
| TU268481 | other | downstream | 872467 | 15812389 ~ 15844783 (-) | True | G226830 |
| TU267049 | other | downstream | 3348400 | 13367763 ~ 13368850 (-) | True | G225622 |
| XR_003403925.1 | other | upstream | 2492568 | 19214759 ~ 19214923 (-) | True | LOC113539409 |
| TU270720 | other | upstream | 2986124 | 19708315 ~ 19708841 (-) | True | G228758 |
| trnae-cuc_28 | other | upstream | 4629052 | 21351243 ~ 21351314 (-) | True | trnae-cuc_28 |
| XR_004579494.1 | other | upstream | 5028944 | 21751135 ~ 21811084 (-) | True | gdpd5b |
| XR_004579495.1 | other | upstream | 5028944 | 21751135 ~ 21811083 (-) | False | gdpd5b |
