RNA id: XM_026934950.2


Basic Information

Item Value
RNA id XM_026934950.2
length 967
RNA type mRNA
GC content 0.46
exon number 4
gene id rwdd3
representative False

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 18388508 ~ 18392745 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTGTGGTTGCTGTGGTAACGTGAACAACTTCCAATCGGCACGCTCGTGTATAAAGAAGTACTAGCTAATCACAGAGCAGGAGGCGGGATTGTATGAATACGGGTGTGGGAACATGACGCTTACCAGCCAGTGAAGTTCAGTGCATGTTTTTGCACTCATGTTGTGAAGATGTCTGAAGAAGCGCTGGATGAAATGTCAGTTCTGTCTGCcattttttgtgaaaaagaCGAGTTTGAGTTGATTGAGGAATCAGCTCAGACAGGACTTGTGTACCGCATCTGCACTGCGATAGACACAGACAGCGGGAGAAAAACGCTGAACCTCACTTTCCATCTCCCTCCCCTGTACCCTCAAACCCCTCCTGATATCAGCGTCACCTCCGGCGATTTCTCGAGGAGTCACTGCCAGGAGCTGAAGAAAGCGATGCTCAGTAAAGCTCACACTCTTCCATCTGAGCCCATGGTTCACCACCTAGTCACGTGGCTTCAGCACAACTTCACTGACCTGATTACGACCCCAAACAGCCCAGGAGACTGCTCAAATACAGCCCACAGTAAAGCAGAGGACACCTGGATGGCATTGCTGCATTTAGATCATATGCGGTCTAAAGCTAAATATATCAAACTGATTGAAAAGTGGACTACGGAGTTGGGGTTGATGGGGAGACTGTTTGTGGGAAGGCCGATTTTGATTTTACTGCAAGGAACAAAGCAAAGCATTAAGGAATTTATCCACCTTCTGAGGACGATGAAAGTTGACATCGACTCGTCAGGCAAACGGTGCAAAGAGAAGATGATGAGGGTTTTATGTGAAGTGCCCCTTACCGAGGATTTTAAAAGAATATCAGCGTTTGAGGTTAAGGAAGACTTGTCTTTAGAAGACCTCAGAAGGGAGTTTGATTTAGTCGGATCGATGAAGCTTTACCAAGAATTTGTTCCCTCGTTACAATAAATGTCTGATAAATTa

Function

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270036 lncRNA downstream 314313 18074596 ~ 18074799 (-) True G228131
TU269607 lncRNA downstream 899680 17486631 ~ 17489432 (-) False G227786
TU269609 lncRNA downstream 899680 17486631 ~ 17489432 (-) True G227786
TU269582 lncRNA downstream 950526 17434055 ~ 17438586 (-) False psenen
TU270099 lncRNA upstream 24709 18417454 ~ 18418564 (-) True G228188
TU270408 lncRNA upstream 168692 18561437 ~ 18618921 (-) False pxylp1
TU270432 lncRNA upstream 213182 18605927 ~ 18608241 (-) True G228483
TU270520 lncRNA upstream 618679 19011424 ~ 19012679 (-) True G228564
TU270593 lncRNA upstream 955894 19348639 ~ 19348839 (-) True G228635
XM_034310633.1 mRNA downstream 43221 18324540 ~ 18345891 (-) True ptbp2b
XM_026934718.2 mRNA downstream 354138 18006444 ~ 18034974 (-) True plppr4a
XM_026934749.2 mRNA downstream 403563 17975631 ~ 17985549 (-) False palmda
XM_034310487.1 mRNA downstream 406874 17975631 ~ 17982238 (-) True palmda
XM_034310635.1 mRNA downstream 416187 17962990 ~ 17972925 (-) False si:ch211-153l6.6
XM_026934925.2 mRNA upstream 422 18393167 ~ 18400086 (-) True LOC113539254
XM_034310839.1 mRNA upstream 9982 18402727 ~ 18422483 (-) False LOC113539356
XM_026935072.2 mRNA upstream 9982 18402727 ~ 18410057 (-) True LOC113539356
XM_026934594.2 mRNA upstream 168677 18561422 ~ 18575931 (-) True pxylp1
XM_026934596.2 mRNA upstream 168677 18561422 ~ 18570646 (-) False pxylp1
TU268927 other downstream 2024808 16363381 ~ 16364304 (-) False si:dkey-118k5.3
TU268923 other downstream 2071767 16316651 ~ 16317345 (-) True G227205
TU268676 other downstream 2224076 16119297 ~ 16165036 (-) False G226991
TU268481 other downstream 2544329 15812389 ~ 15844783 (-) True G226830
TU267049 other downstream 5020262 13367763 ~ 13368850 (-) True G225622
XR_003403925.1 other upstream 822014 19214759 ~ 19214923 (-) True LOC113539409
TU270720 other upstream 1315570 19708315 ~ 19708841 (-) True G228758
trnae-cuc_28 other upstream 2958498 21351243 ~ 21351314 (-) True trnae-cuc_28
XR_004579494.1 other upstream 3358390 21751135 ~ 21811084 (-) True gdpd5b
XR_004579495.1 other upstream 3358390 21751135 ~ 21811083 (-) False gdpd5b

Expression Profile