RNA id: TU270099


Basic Information

Item Value
RNA id TU270099
length 861
lncRNA type intronic
GC content 0.43
exon number 2
gene id G228188
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 18417454 ~ 18418564 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

catcaacGAATGGGaagcctccaccctgtgtgtccTAGAAAAGGCTATGCATGCTTGCATTAGGCATATCCCTTTCTGCACTGCCCTCTGAAGACAATGCATCTCGTACATCCCATTGCATCTAATGGTATAACAatgtattttctctgttttaatgCACCCAAGCATGCACCTCTTAGACTGGATGGTTCTAACTTATCTGTTTTGTTCTCCAAGCAAAAACACTGGCTTCAATCATTCATTAGGTTCAGTGGTGTCCTGTGAAGGTGAAGCTGTGATGAAGCTTATATATTCGTGCACAAAAGTTTTAGATGCACTTTGTTTCGCTTTTGTTTCTCGTGGTTGTTTTTTTCGCCCCAGAAGCTTCTCAGAAAGGCTTGCTGATGtagaagaggggaaaaaagaaagcagtgaTGGGCAGGACAAAGAGAGAAGCAACTAAGCAAAATGTATCCCACCAAAAGAATCGCCGAAAAGTGGCTACTGGATTCGAATCGATTAAATATTCGATTATTCCAACATTcgaacatttaaaaataatcgaGCGCGAgcagatggaaaaagaaaaaaaaaagggaagcgCCAgagcaaacaacaaacaacacattTCACTCCAAACAAACAAGCAGTGAGTAAAGCTTCTCCAGGCTTACCTTGCTCCTAACTTCAGCTGATAAACCGTAAGCGGGTCCTTTGTTAAACTGAgccattttctttcctttactGTACTTTACTGTACTTTACTTTAAAGTCGGTGTGGATGGATACTGCTCCAGAAGTTGCTTTGATTTAGAGGAAGATCCTCAGCAGCACGACGCCGCGCGGAGAGAAATAGGCTACGTGAGTTTGGGCTGGGCAGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270092 lncRNA downstream 24818 18388508 ~ 18392636 (-) True rwdd3
TU270036 lncRNA downstream 342655 18074596 ~ 18074799 (-) True G228131
TU269607 lncRNA downstream 928022 17486631 ~ 17489432 (-) False G227786
TU269609 lncRNA downstream 928022 17486631 ~ 17489432 (-) True G227786
TU269582 lncRNA downstream 978868 17434055 ~ 17438586 (-) False psenen
TU270408 lncRNA upstream 142873 18561437 ~ 18618921 (-) False pxylp1
TU270432 lncRNA upstream 187363 18605927 ~ 18608241 (-) True G228483
TU270520 lncRNA upstream 592860 19011424 ~ 19012679 (-) True G228564
TU270593 lncRNA upstream 930075 19348639 ~ 19348839 (-) True G228635
TU270655 lncRNA upstream 1146406 19564970 ~ 19565203 (-) True G228697
XM_026935072.2 mRNA downstream 7397 18402727 ~ 18410057 (-) True LOC113539356
XM_026934925.2 mRNA downstream 17368 18393167 ~ 18400086 (-) True LOC113539254
XM_026934950.2 mRNA downstream 24709 18389112 ~ 18392745 (-) False rwdd3
XM_034310633.1 mRNA downstream 71563 18324540 ~ 18345891 (-) True ptbp2b
XM_026934718.2 mRNA downstream 382480 18006444 ~ 18034974 (-) True plppr4a
XM_026934594.2 mRNA upstream 142858 18561422 ~ 18575931 (-) True pxylp1
XM_026934596.2 mRNA upstream 142858 18561422 ~ 18570646 (-) False pxylp1
XM_034310712.1 mRNA upstream 232532 18651096 ~ 18872252 (-) True LOC113539090
XM_034310713.1 mRNA upstream 232532 18651096 ~ 18800417 (-) False LOC113539090
XM_026934772.2 mRNA upstream 465821 18884385 ~ 18948975 (-) False aplp1
TU268927 other downstream 2053150 16363381 ~ 16364304 (-) False si:dkey-118k5.3
TU268923 other downstream 2100109 16316651 ~ 16317345 (-) True G227205
TU268676 other downstream 2252418 16119297 ~ 16165036 (-) False G226991
TU268481 other downstream 2572671 15812389 ~ 15844783 (-) True G226830
TU267049 other downstream 5048604 13367763 ~ 13368850 (-) True G225622
XR_003403925.1 other upstream 796195 19214759 ~ 19214923 (-) True LOC113539409
TU270720 other upstream 1289751 19708315 ~ 19708841 (-) True G228758
trnae-cuc_28 other upstream 2932679 21351243 ~ 21351314 (-) True trnae-cuc_28
XR_004579494.1 other upstream 3332571 21751135 ~ 21811084 (-) True gdpd5b
XR_004579495.1 other upstream 3332571 21751135 ~ 21811083 (-) False gdpd5b

Expression Profile