RNA id: TU270408


Basic Information

Item Value
RNA id TU270408
length 1403
lncRNA type sense_over
GC content 0.35
exon number 2
gene id pxylp1
representative False

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 18561422 ~ 18618921 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtacaGGAAtTGTAGACTGTAATATacagagaaggaaaaatatGATGAAAACTATGCAGAAAGGATTTCTGACATTATCACAATACTGTTTTATAATgttctccatcttttttcttaAACTTTCATGTTCACCCTCGTCTAGTGAACATAATCAAGTGATTCTGGGATTCTCAGAGAAAGAAATGCATTTGAAACCTGGACAGCTTTGTGCTGAATAATAGCAATATTGTGCGTGCAACATATCACCATCTTGTATAGTTTATTATTGGCACATATCTATCAAGGACAGATGGcaatgaatgaaacatttgcTGCCCAACCTTGTATTTACACACCAAATCAGGTTTGTTCTTCAAGCTAATTTGGATATAATGGCAACCTGCTCAGCATAAACCATGCTATCATGGAAATCTGTATTTATCTTGGGGTCACTTGTACTGCtgcttaatttatttaaatgatactGACGTTCTCATTCTGTCTTGAAGAAGTGATATGGAAAATGCATCAAGCCTGCTTTCCAGTtttgcacattattttattcctgttcTATGAATCTGCATATCTGCAGTTAAGCTGCCCACACCGACTTCAAAAATCATCTGAAAGCCACAAAATTTGTCTTAAACAAAATGTCAGAGTGAGCGAAGGTTAAAGCTAGCACAGACGTCAAGCAATAAATTATCCCAAATCTATATTTAGGGTCGGTCAGGATGTTTTTCAGCGATACATTAGATTTAACTGACTTACagtacataaaaaaatcatcttGTATGAATGAAACAATAAGCCCAGGGTTGAAAAATCTTAGAGTGTATTTGTGACAGTGAACTGAGTAAGTACTGGACAGTAGCACTTTGATTTACTGTGCGTCTGCGTTTGAAAGAACACAATGAGGTTTGATATGCAGCCTGTCAGCtttcatttaaaagcattttaacaACACTTGCAAATCAAGCACTGATTACCAGCACAGTCCTGAGGACAATCACACTGATTCATATGTAGGAAAGATTTTGATGATAAACGTTTATCCGTTATGTCTGCAGACTAGTTTTTGTACGATGTGCGgtttttaaaagtttgtaaGTTTGGAGATTTTGGCGCACACAGCCACTTTATTTCCATCTTCATGCAGTGACGAGGATTTTTAGATACACTGAGATTCAAGGTTATACAGTAGATTTGTGTTTAactttgtttaaataattgcaaaattattttcatacacTTAACATGGAATAATGTCACATCCGTTTTCTTAAAATGGAGAAAACCAGGAGGATTAAAAGTCTGGTGTAGGGAATGTTGAAGGATTTTGTATTGTGattgctatttttattattaatattatcgTGTTCTAGCACATTCCTTAATATCAAAGCACATTTTGCAATAAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270099 lncRNA downstream 142873 18417454 ~ 18418564 (-) True G228188
TU270092 lncRNA downstream 168801 18388508 ~ 18392636 (-) True rwdd3
TU270036 lncRNA downstream 486638 18074596 ~ 18074799 (-) True G228131
TU269607 lncRNA downstream 1072005 17486631 ~ 17489432 (-) False G227786
TU269609 lncRNA downstream 1072005 17486631 ~ 17489432 (-) True G227786
TU270520 lncRNA upstream 392503 19011424 ~ 19012679 (-) True G228564
TU270593 lncRNA upstream 729718 19348639 ~ 19348839 (-) True G228635
TU270655 lncRNA upstream 946049 19564970 ~ 19565203 (-) True G228697
TU270665 lncRNA upstream 953271 19572192 ~ 19572425 (-) False LOC117599059
TU270710 lncRNA upstream 1065962 19684883 ~ 19685247 (-) True G228748
XM_034310839.1 mRNA downstream 138954 18402727 ~ 18422483 (-) False LOC113539356
XM_026935072.2 mRNA downstream 151380 18402727 ~ 18410057 (-) True LOC113539356
XM_026934925.2 mRNA downstream 161351 18393167 ~ 18400086 (-) True LOC113539254
XM_026934950.2 mRNA downstream 168692 18389112 ~ 18392745 (-) False rwdd3
XM_034310633.1 mRNA downstream 215546 18324540 ~ 18345891 (-) True ptbp2b
XM_034310712.1 mRNA upstream 32175 18651096 ~ 18872252 (-) True LOC113539090
XM_034310713.1 mRNA upstream 32175 18651096 ~ 18800417 (-) False LOC113539090
XM_026934772.2 mRNA upstream 265464 18884385 ~ 18948975 (-) False aplp1
XM_026934773.2 mRNA upstream 265464 18884385 ~ 18948975 (-) False aplp1
XM_026934771.2 mRNA upstream 265464 18884385 ~ 18948975 (-) True aplp1
TU268927 other downstream 2197133 16363381 ~ 16364304 (-) False si:dkey-118k5.3
TU268923 other downstream 2244092 16316651 ~ 16317345 (-) True G227205
TU268676 other downstream 2396401 16119297 ~ 16165036 (-) False G226991
TU268481 other downstream 2716654 15812389 ~ 15844783 (-) True G226830
TU267049 other downstream 5192587 13367763 ~ 13368850 (-) True G225622
XR_003403925.1 other upstream 595838 19214759 ~ 19214923 (-) True LOC113539409
TU270720 other upstream 1089394 19708315 ~ 19708841 (-) True G228758
trnae-cuc_28 other upstream 2732322 21351243 ~ 21351314 (-) True trnae-cuc_28
XR_004579494.1 other upstream 3132214 21751135 ~ 21811084 (-) True gdpd5b
XR_004579495.1 other upstream 3132214 21751135 ~ 21811083 (-) False gdpd5b

Expression Profile