RNA id: XR_004579456.1


Basic Information

Item Value
RNA id XR_004579456.1
length 5193
RNA type misc_RNA
GC content 0.52
exon number 28
gene id zgc:77784
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 7392415 ~ 7463499 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtccCTGCGCGCGCTGTCTCTTTAAGGTTGGTCTCGTACCGCGCGCTGTCTCCGCACGCTGAGCTCGTGCGCCTCGCGTCTTAATTACAGCGCGGAGCTCGCGCACAGCAGGTGCATCCCGCATCTCTATCAGCCACGTTCACGCAGGCAGCTGAAATGGACCAGAAAGTCAATTTGTCGAGCTTCGTTATGTTATTTTCACCAGTATCTGCCTGCATGTAGCTTAAGACCCAGGGCTCCGTCATAGTTTGAATACTGATCTGTCTGTGTGCGGTTTACTGAACCCGCAAGAGTAGTTCAAGCAACATGCGCTTTAATTCAAATGCGACAGGTTTTTCTCAATGCGGCTCGTTCTTTTGTTGCATGCGCACTTCCTAACTATGGGACTTCTATGCGTTTTCAGTGACTGCTCACGCGCTTATTCTGCAAACACCACGCAAAGATCACTGTTTTGCTATAATAATCGATCCAAACCCACCAGACGAGCGGGACAATGGCGTTGCGGGTCAGAGAAAGCGTCCTGCTGATTTTCATTCACATCTGCCTATGCACTGGCTTTCGGTTGCGTCTGGAGGACAGTCCGCCTCGGATCATAGAAGACCCATCTGATCTGATTGTGTCTAAAGGAGAACCAGCTACACTGAACTGCAAAGCTGAGGGGCGGCCTATGCCGAATGTGGAGTGGTACAAAGATGGAGAACATGTAGAGACAGATAAAGATGACCCGCGTTCACACCGCATGCTGTTGCCCAGCGGCTCGCTCTTCTTCCTGCGGATTGTGCATGGCCGCCGCAGCAAGCCTGACGAAGGCATCTACACCTGTGTGGCCCGTAACTACCTCGGGGAGGCAGTGAGTCGCAACGCCTCGTTGGAGGTGGCCAcGCTGAGAGATGATTTCCGCCAGGCCCCGAGTGATGTGGTGGTTGCTGCCGGTGAACCTGCCGTGCTGGAGTGCATCCCACCACGCGGTCACCCAGAGCCCAGCATCTACTGGAAGAGGAACAACGTCCGAGTGAGCGACAAAGACAGCAGGATCTCTATGCGTGGTGGCAAGCTGATGATCTCACACACTCGGAAAAGTGACGCAGGCATGTACGTGTGCGTCGGCTCCAACATGGTGGGAGAGAGGGACAGCGATCCGGCCGAGCTGGTGGTTTTCGaGAGACCAGTGTTCATCCGTAGGCCTGTGAATCAAATAGTGCTGACAGAGGAAACAGTTGATTTCCTGTGCGAGGTCCATGGAGATCCGGCTCCCACCATCCGCTGGAGACGCGAAGGGGGAGAGCTGCCTCGCGCCAGATTTGAGATCCGCAGTGACAACACTCTCCGTCTGGTGAAGGTGCGAGAGGAGGACGAGGGAACTTACACATGTGTGACAGAAAACAGCGTGGGGAGAACCGAGGCTTCGGCAACGCTGCAAGTCCACGTCCCTCCACAGATTGTCCTCCAGCCCCAGGACCAGGTCTCAGCCCAAGGCCAGACTGTCACATTCCACTGTGGCACAAAAGGCAACCCTCCTCCAGCAGTTTTCTGGCAGAAAGAAGGGAATCAGATGCTGCTATTCCCAGGGCAGCCTCCCTCTCAGGCTGGACGCTACTCTGTGTCTATGAGCGGTGAGCTAATCATCACTGCTGTCCAAAGTGAAGATTCTGGGTACTACATATGCCAAGCCATCAGCGTGGCAGGCAGTACTGTCTCCAAAGCCTTCCTGAAGGTAGTCACTGGGCCCTCAGATCGCATTCCCCCAATCATCCACCAAGGCCCAGGTAACCAGACGCTGACACGGGGCTCCAGTGCCAAGCTCCAGTGCCATGTAATGGGCATCCCACCCCCCAGCATCAGGTGGGAGAAGGACGGGCAGAGACTCTCAGCAGATGGAGTCCACATCAATCTGATTGAAAATGGCACTTTACACATCAGCAGCCTGCAGGAGACCGACTCAGGGATGTACACGTGTGTAGCCTCCAGTTCCACAGGAGAGACGAGGTGGAGTGGCACCATCACTGTGAGAGATACAGAGACGTCATCCCTGGTCCGGCTCTCTCAGACCCTGCAGCTGCCTGGTCCCCCACTGAAGCCTGCCGTGACGGACGTGAGCCAGAGCAGCGTCACGCTGACGTGGCAGCCCAACCAGCATGAAGGAGGCGCTGCTGTCACCTCCTACATTATCGAAGCTTTTAGTCAGTCAGTGGGAAACACATGGCAGACTGTTGCAGATCAAGTGAAGCAGGAGAAGCACACAGTGTCTGGTCTCTTCCCAAACACTGTGTACCTTTTCATTGTGCGTGCAGTGAACTCGTATGGCCTGAGTGACCCAAGCCCCATCTCAGAGCCTGTCAGAACACAAGgcaatcttcctgcaaagatcacacTAGatggCAGTCCCAGCAGTTCACCAATCGATCTCAGGCGTGTACAAGCGGATTTAGCAGAGGTCACGGTGTATGTGCATCCTCCAGAGATCCTGACTCCTACAAGCATACAGATCACATGGACTGTTGAGCGTGAGCCGTACTACATTCAGGGTTACAGGCTGCTGTACAGGCCGTCGGGCGGTGCCTGGCTGGTTCAGGACATAAAGGCAGCgtccaaacacacagcagtgttatCAGAGCTGCACAGAGGCAGAGAGTATGAGCTCAAATTGAGGCCCTACTTCAAAGAGTTCCAGGGCTCTGACAGTGAGCTAGTAGTGTTTCGCACCCCAGAGGAGGtgcTATGTGGCCCCCCACAGGCTGTCAATGTGGTCCAGTTGGATAACAGCTCCACAGTGCGAGTGTCCTGGGAGCCTCCTTTTGCTGATATCCAGGATGAGCCCATTTTGGAGTACAGGGTGTGGTGTGTAGGGAATGTGTCTGGACTTCAGATGCAGTTAAACCAAAGCGTGACCGGGGAAGTCCTCCACGTGCTGGTGGATGACCTGGTGCCTGAGATACTGTATAGCATGCAGGTGGTTGCAGTGACCAGTGCAGGAGCTGGAGAACCCAGCGAGCCAGTATTTATTCTCATCACCCCTGTAGGGGAGCCCTCATTGCCTGTGCTGAATGATGACAGCAGCAGTCTTTCGGAGCACATCTCGGCACTGTTCAGACAACCAGCTTTTATTGCCACTCTGGGTTCAGCCTGCTGGATGGTGCTGATGGGCTTCAGTGCCTGGATCTACTGCAGACACAAGAGAAGGAAAGAGCTCGGCCACTATGCCACTTCTTTTGCCTACACACCTGCAGTTGGCCTCTCCAATGGTGACGGATCAGGACTCGGAAGGCCATGCTTGCTTGGATCCAACATGGCTAACTATCCCTGGCTGGCAGATTCATGGCCGAACAACAACTTCAACCAGAGCAGTAAAGACTCAATGAACTGCTGCACTGGCAAACACGACTCCACAGACAGATATTACAACACTGCAGGGACAAACTTCCTGAGGCCGAACCAAGCATGCAGCCCAACATCCAACGAAGGCGCCATTTACAGCACTATAGACAGAGCTAACGAGTCACAGCATGACATGAGTAGTGTTTACTCTCATGACCTCTACACCAGCTCACCAGTCCTGTCCAAACCTGACCTCGACCAGTGGAGCTTACAGTCTGACCTCAGCACAGCTGAATATGCCCAACTCCAGTACCCAAGGACGGACAATGCTAATGTGGAAATGCAGAAGCCTTGTGAGTCAGCGACGTATAACTGGTCCAATGTTCTGTCCCTGCCACCGCCAAATACTCGAGAACAGAGACAGCAGCCCAGGTGTGAGAATGATGAAGACTGGTGTGCTCCTCTGCCGGAGAGGACTTATCGGATGGAAGGTTTGGAGAACGCAGCCACGTTGCCTTTGAGAGGAGAGCGCTGTGGGCGAGCTACCACCTACAGCCAGCCGTTCACAGCTACCCTAAATCTATCTCCTAATGAGGAACGAATGCCAGTTAATCCATGTTTGCGGCATCCTGACTTACTGCTacgCATTAAGGGACCATGCGCACCAAATTCCAAATTAACTCCGCCCAACCCAAACCTTCTCACCAACCTGGAATCACACAACAGCAGTCTGCCCCGTCTGCCAGGCCACTGGAGAGACATCTGTCAAGCAGAGAGGTCTCAGCACTTAAAAGGTGACGTTGCTTTATTTGTGCATGAGAAATCAATTCCATCCCCCACTGAGCAGCCACGGTCCAAAAAGACAtcatccagagatggacctcGGAGAAGAGAAACCTTGAAACCAGGAGATCTGCCCCCTCCGCCTGAACCCCCTCCCGGAGAAGGCTGTCAGGTGGACCTGGCAGCCATGTCGAAGGCCAGAACGCAGCCACCTAGCCGAGAATGGAGGGCAGATCAGAGAACACAGAGCCAGTGGAGCACAGAAGGTCTGAAAACCtactacacactcacaaataGGatgAGGAGCTTATCCATTACAGTGTGAATATGCAGTCCAGGAATCACATGTCCAGTCGGTATTCTCCTCCTGAACCTTCCAGCTCTTGCTCTCATCCCTCCACAGCTTCCCACAccaggaggaaaaaagagAACGTGTGAgtggaagatgatgatgaatttCTTCTCAGTGTCCTGCTGTGCCATGTGATCCGACAAACTTTTATTGCAAATGATGTCCAGTAGAACACAAGAGCCATACAAGTGTATGTGATTCCCATCCACCTCCttaagctatttatttatttatttattatttattttatttattctgttgttatttttgtatGATTCCTTGCTATGTTGAACCCCTGCTTTTATGCATACAATATTTTTGACTGTGCTTTGTGTGAGTGAACAacaaaatgtttctgaatgtatttttttctatttacctTGATACCTcgatgtttacatttaattccATGCTGTTTATGTTGTGTAATACTAGAGTCTCTGCATCTAAACCCATAACAGTTTTATGGTAGAATAGTACAGCAGTTTAAGGTCCAGCATCACTGCTTCAATTCTGTCCACACTGCAAAACTGTCATCTGCTCCAGAGAGATGAGTCTTGCCTGCTGAGCTGTGCTGCTGACATACACATTAAGAAATCGTGCAAGCTAAAGTGCTAATGTTACAAACACTGAATGGAAGTAAGCAGggcatattaatattatacaaatGAGATGACCATGTTGACCGCATTAAAATTGTTTATGTCCTCTGTCGTATTTTGGATTGTGCAAGAAAACACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262771 lncRNA downstream 20095 7371370 ~ 7372320 (-) True G221902
TU262694 lncRNA downstream 171486 7218666 ~ 7220929 (-) True G221844
TU262663 lncRNA downstream 214119 7133517 ~ 7178296 (-) True G221814
TU262657 lncRNA downstream 268213 7122717 ~ 7124202 (-) True G221812
TU262485 lncRNA downstream 519056 6872831 ~ 6873359 (-) True G221683
XR_003403360.2 lncRNA upstream 113055 7576554 ~ 7577056 (-) True LOC113532601
TU263284 lncRNA upstream 668864 8132363 ~ 8132704 (-) True G222367
TU263294 lncRNA upstream 699134 8162633 ~ 8162848 (-) True G222377
TU263325 lncRNA upstream 733306 8196805 ~ 8197207 (-) True G222391
TU263469 lncRNA upstream 777565 8241064 ~ 8242176 (-) True G222522
XM_026924050.2 mRNA downstream 16350 7372414 ~ 7376065 (-) True lim2.3
XM_034310861.1 mRNA downstream 27272 7355180 ~ 7365143 (-) True LOC113532840
XM_026924739.2 mRNA downstream 108442 7276448 ~ 7283973 (-) True LOC113532980
XM_026924862.2 mRNA downstream 138809 7229918 ~ 7253606 (-) True alcamb
XM_034310678.1 mRNA downstream 166869 7198831 ~ 7225546 (-) True dyrk1ab
XM_034310356.1 mRNA upstream 86328 7549827 ~ 7563594 (-) False acad8
XM_026924022.2 mRNA upstream 86328 7549827 ~ 7560913 (-) True acad8
XM_026924702.2 mRNA upstream 107702 7571201 ~ 7576277 (-) True vps26b
XM_026924934.2 mRNA upstream 114556 7578055 ~ 7591818 (-) True jam3a
XM_026924611.2 mRNA upstream 281800 7745299 ~ 7907858 (-) False cadm1b
trnap-cgg_8 other downstream 196821 7195523 ~ 7195594 (-) True trnap-cgg_8
TU261846 other downstream 1368104 6021220 ~ 6024311 (-) False dynll2a
TU261738 other downstream 1588537 5797985 ~ 5803878 (-) False LOC113532612
TU261666 other downstream 1681524 5710098 ~ 5710891 (-) True G220990
TU260466 other downstream 3575628 3811560 ~ 3816787 (-) False LOC113544484
TU263800 other upstream 1477519 8941018 ~ 8946899 (-) True G222809
TU264952 other upstream 2844561 10308060 ~ 10312487 (-) False LOC113533081
XR_004579509.1 other upstream 5477411 12940910 ~ 13007559 (-) True nf1a
XR_004579489.1 other upstream 5606637 13070136 ~ 13080860 (-) True wsb1
TU267049 other upstream 5904264 13367763 ~ 13368850 (-) True G225622

Expression Profile