RNA id: XM_034310363.1


Basic Information

Item Value
RNA id XM_034310363.1
length 2982
RNA type mRNA
GC content 0.42
exon number 15
gene id dixdc1a
representative False

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 8203662 ~ 8212072 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTAAACACATCAGGCTGAGCCATCTGAACAGAAACAGGAACAAGAGCGTGAGACATGAAGACATGAAACTAATCCTTCTTACTAATCGCAGTGAACAGCAAGCCTGCaatgaagaggagaggagatacACAATTTGCGAGGAAAATGCCTGAAGAAACATGCACAATTCAGCGGCCAGGGGACATGGCATACTATCCcgttcctcttttctttcttattatgGCTCACAGCTGAAAACAGGAATGCCTCATGATTCATAAAccaaacacttacacacatgcTGGTCACTTTATTTCATTCTAAAGAGGATTTAGTCAGGGTTTTAAGCCCTGTTGACTGAGGTGTCTTATTCTGGAGGATTTACAAAAACAAGCAGAGATTTGGATTTGTACATGCTGACAGAAATATTGTCCTGGTGTCTGAGGGCTGCTTCCCATCACTGGATCAGTGCTCTGTGCAGGCTGCTTTTGTTGTGTTACTGACTGACGTGCCCACCCTTTTAACTGGGGCTGCTTCATTTCGGTATGGTCTTGTCCTGGTCCATCATATACCACACCTTGGGAAGAAACAGCATGGAAGGTTAGGAGAGCAGCTACAAGCATGGGAGCCAAACAGATGAAATGTCTTAGCTCATCCAGCCCGACACACACGCCTAAAGAGGATTACATCATCGGCCAGGCTGAAGAACAGGGAGAGATTGTGGGAAACCACACAGAGCAACCGCAAAGCCTAAATGATGCAGTAAAATTGTCATTCAATGAGCCAACTCCAGGACCTGAGAACACTGGGACAGGAGATGGGAGCTCCTGGGAGGAGCAGCTTTGTGTCCAGCAGGAGCAGCTGGAGAAGGAGATGCAGGAGACTAGGAAGATGGTGACAAGGCTTCaaGCTTTACTACTTCATGGGTCACTTCCTGAAGATGAGCAAACAACTTCTCTATTTGGAGACAGTGCTATCAATGCAGAGCAGCAGCTGATATTAATTCGCAGTCGCCTCGATCAGAGCATGGAAGAGTCCCTGGATCTGAAGAGGGAGTTGCTGAGGTACAAGCAGGAGGCACGCAATCTTCAGGCAGTTAAGGATGCCTTGCAGTACCGCATGTCAATACAGGAAGACTCAGTACTGCAGCTTAAACAGGAACTACTCCGATCCAGCATGGACAAGGAGGACCTAGAAGGGCAGAATATGGAACTGCAAAGGAAGCTAAGTGATAGAGACAGATTGCTGAGTGAATACAAAaAAGAACTtgcacagaaagacagacaactTCAGCAGCATCAGCCTAAACTGGAGGAGTCAGTGTGCACACTCAATGAGACTAATCATCACAGGATGTCTAGTTGTAAAAACAATGGCTACAGCCATATGATGGAAACATTGTCTTCACCATTTCCACATGGAGTGGGTGATGAGCTGCAGCTGGTGCGGGATGCTCTGCGCACTCTGAGGAACAGTTTCAGTGGTCATGACCCACAGCACCACACACTGGACACTCTGGAGCAGGGGGTGTCCACCCTGATAGACCGTCTCCATTCTATTGACTCTAAGAGGAGGCAGGACAGAAAGGGTTCGAACAAATCGCCAGGGAGAAGAGCCAATCACACTGATCGAGAGTCATGGCCACCTAGTTCAAAAATACCCCATTCTCACAGTAGTCCTGTGCTCGGCTCCTCAACCTCAACCAAAGTACTCTATTTCACAGATCGCTCTCTCACACCCTTTCTAGTAAACATCCCTAAAAGACTGGGGGAGGTCACACTTCAGGATTTCAAGGCCGCTGTTGGAAGACACAGCAATTTCAGGTATCACTTCAAGTCTCTGGACCCTGAGTTTGGAACAGTGAAGGAGGAGGTATTCCAGGATGACGCTATAATACCTGGATGGGAAGGGAAGATCGTTGCCTGGGTGGAAGAAGACCATAGTGAAGGCAGGTAACTGAAGACAGAAGAACAGCCTGTGATCTGGGAATTGTAATCTGCCcaatgtgttcattttatacGTGTGTATACCTCAGCTCTACACAAATCTGCACCATGTCATCCCATATAATGCAATGGTCCATTTTTGTGTGACAACTGATTGTAAAAACTGTTTACAAAATCATTCCTGACCTTCCTCTGATTGTATTAGTACTACGACTGATATTTTTTTGGAAGACATCTTTATATAGTGTTTAGAAAAGACACTATTTTAAAGGATGCTAGACATAGTATGCAGAAATGACTATATGTTAGCTGCCAACCTATTTGCTAAATGAACATACTAAGTACTAAACCTAAGTATTCACCCCACTTGTACCCCACatttacaacctggaactgaaaggacttaattgggattatatgtcattaCACAAAATAGCAATAATATTGGAGTGaatggaaaaatcaatatagtttgcaaaaatatttacaaataaaaaatgtaattgaataAGTAACCCCCCACTAGTGTGCAACTAAATTAATTCTATTGCAACCAGTTGCCACAATGGAGTCCACAGATTTTCCCTCtcacttcagtattatgggtTATTTTACGTAGAttaatgacatataatcccaacactacaaaatgtggaaaaggtcaaggggggtgaatactttatCAAGCCACTGTATCATCAAATGTGTTTCATGTCACAGCTTCCAATGTCATGTTAGAGTACCTTGCTGAAGGCATTAATTCCTACAattaataccttttttttttttttttttttttttttttaaatctaaagtCTTTTTagatttcatatttttgttattctatTATTTGAAATCACTGGTGATTCTGAAATGTGAACCTAAAAGTAGGAAAGATGGGACCACTTCATTTGTAAAAATTTCtataattttaatacaaaatatgtttctgaaaataattttctgtaTAGTGTGCATGTTTGTCCAGTGTTTTTATCCATGTTAAATGAAACATCCAATATTTGTCCACCATGTTAATAAAGATGCATTTCCTGTA

Function

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0060071 Wnt signaling pathway, planar cell polarity pathway biological_process
GO:0043010 camera-type eye development biological_process
GO:0030177 positive regulation of Wnt signaling pathway biological_process
GO:0046328 regulation of JNK cascade biological_process
GO:0021695 cerebellar cortex development biological_process
GO:0050772 positive regulation of axonogenesis biological_process
GO:0030900 forebrain development biological_process
GO:0043025 neuronal cell body cellular_component
GO:0043679 axon terminus cellular_component
GO:0005925 focal adhesion cellular_component
GO:0005938 cell cortex cellular_component
GO:0043015 gamma-tubulin binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0031435 mitogen-activated protein kinase kinase kinase binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263325 lncRNA downstream 6455 8196805 ~ 8197207 (-) True G222391
TU263294 lncRNA downstream 40814 8162633 ~ 8162848 (-) True G222377
TU263284 lncRNA downstream 70958 8132363 ~ 8132704 (-) True G222367
XR_003403360.2 lncRNA downstream 626606 7576554 ~ 7577056 (-) True LOC113532601
TU262771 lncRNA downstream 831342 7371370 ~ 7372320 (-) True G221902
TU263469 lncRNA upstream 28992 8241064 ~ 8242176 (-) True G222522
TU263531 lncRNA upstream 192778 8404850 ~ 8406183 (-) False sorl1
TU263542 lncRNA upstream 252504 8464576 ~ 8491284 (-) True G222591
TU263563 lncRNA upstream 332840 8544912 ~ 8548374 (-) True G222610
TU263847 lncRNA upstream 825408 9037480 ~ 9043751 (-) True G222852
XM_026924504.2 mRNA downstream 66453 8122414 ~ 8137209 (-) True LOC113532837
XM_026924611.2 mRNA downstream 295804 7745299 ~ 7907858 (-) False cadm1b
XM_026924614.2 mRNA downstream 295804 7745299 ~ 7907858 (-) False cadm1b
XM_026924610.2 mRNA downstream 295804 7745299 ~ 7907858 (-) True cadm1b
XM_026924615.2 mRNA downstream 295804 7754031 ~ 7907858 (-) False cadm1b
XM_026924164.2 mRNA upstream 192757 8404829 ~ 8478912 (-) False sorl1
XM_026924163.2 mRNA upstream 192757 8404829 ~ 8478912 (-) True sorl1
XM_026923882.2 mRNA upstream 279716 8491788 ~ 8498469 (-) True sdhdb
XM_026924084.2 mRNA upstream 290622 8502694 ~ 8512202 (-) True il4i1
XM_026923898.2 mRNA upstream 351098 8563170 ~ 8613424 (-) True sik2b
XR_004579456.1 other downstream 740163 7392415 ~ 7463499 (-) True zgc:77784
trnap-cgg_8 other downstream 1008068 7195523 ~ 7195594 (-) True trnap-cgg_8
TU261846 other downstream 2179351 6021220 ~ 6024311 (-) False dynll2a
TU261738 other downstream 2399784 5797985 ~ 5803878 (-) False LOC113532612
TU261666 other downstream 2492771 5710098 ~ 5710891 (-) True G220990
TU263800 other upstream 728946 8941018 ~ 8946899 (-) True G222809
TU264952 other upstream 2095988 10308060 ~ 10312487 (-) False LOC113533081
XR_004579509.1 other upstream 4728838 12940910 ~ 13007559 (-) True nf1a
XR_004579489.1 other upstream 4858064 13070136 ~ 13080860 (-) True wsb1
TU267049 other upstream 5155691 13367763 ~ 13368850 (-) True G225622

Expression Profile