RNA id: XM_034310372.1


Basic Information

Item Value
RNA id XM_034310372.1
length 1305
RNA type mRNA
GC content 0.54
exon number 4
gene id map6b
representative False

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 7174352 ~ 7186264 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGCTGCAGGTGACGGGCGATTTTACGCAGCAATCGTCCACAGCCAGGCGGGGCTGCGCGCGCACTCATCAGGCCTTACAACAACTACATGGGGTTATTTCTGATGGAACAGGCTGTGGGTAAttagaccaaaaaaaataaatccttatGTACTGGAACATTACTGCAAGATTTCACTGAGGGAAATCCATCACAACAGGAAAAGTCGTTTAAAGAAGAAGAGTGGGAAAACCCCGATGCCTGATTTGTCCTGATTAGGAGTCGCTGCTGCAGGTCTTCAGCATGGCGTGGCCCTGCATCACCCGCGCCTGCTGCATCAACCGCTTCTGGAGCGAGCTGGATAAAGCGGACATCGCCGTGCCGCTCGTCTTTACCAAGTACTCGGAAGTGGCTGAGGTGCGGCACCTCCATCCGCAACCCCAACCGGGCCCGTTAGCGCAATCCCATCATCCCAGCGCGGTCGCCATAGAAACAGAGCCCGCCCACACCGCGCCTCAGGAGTCGgctgcagctgcagcagcatcTTCAGCCGCGCGCGGAGCGTCCGTCACGCGCCAGGACTTCAAAGCCTGGAGGGTCAAACCCGAACCGAGCTGCAAACCCAAAAACGAGTACCGCCCGTGCCAGACACCGTTCGATAACGAGACGCAGTACCGGAAAGATTATAAACCGTGGCCTGTTCAGAAGCGAGGAGATCACCCGTGGATCCCCAAAGTCGAGAGCAAGAGCCAGAAGCAGGAGCACGTGACCTCAGAACCGGACACGGGCGTGGAGAAGTGCGAGATCGAGGAGAGAgtcaaagaaaaagaagatgcaaaggaggagaagaagaagacacCTGGGAAGAAAGAGGAGGATGCTGAGActggagagaagaagaaagtgcAGAAAACTGGGTCCAGAGGAAGATCAGTAGCAGATGCTCTGAACAGGCAGATCAAGCAGGAGGGAACCTCTGGAAGCTCCTACAGGACGGAGTTCAAGGCGTACGCTGATGTAAAGCCGGTGAAACCCATCAAAGCCAAGTCACAGTACAAACTGGCGTTGGAGGAGAAGGCTAGTTTGGAGACGAGCTACAGTGCCACTTATAAAGGAGAGCAGGCAAAACCAGAGGCCACGGATAACAAACTGCTGGAGCGCCGCAGGATACGCAGCCTGTACAATGAGCCCAGCCTTAAAGAACCCAGCAAGGTTTATATCTGACCGCCTGCACCCGCCTGCACATGACGCCAGAGAAGCCCAGTGTGTCCCATTCCAAACCCAAAAAGACGACAAGCCATAGTAAAACAGCAAGTAAAGCTAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262657 lncRNA downstream 53795 7122717 ~ 7124202 (-) True G221812
TU262485 lncRNA downstream 304638 6872831 ~ 6873359 (-) True G221683
TU262484 lncRNA downstream 306018 6871737 ~ 6871979 (-) True G221682
TU262483 lncRNA downstream 307723 6867784 ~ 6870274 (-) True G221681
TU262458 lncRNA downstream 371630 6806155 ~ 6806367 (-) True G221659
TU262694 lncRNA upstream 32404 7218666 ~ 7220929 (-) True G221844
TU262771 lncRNA upstream 185108 7371370 ~ 7372320 (-) True G221902
XR_003403360.2 lncRNA upstream 390292 7576554 ~ 7577056 (-) True LOC113532601
TU263284 lncRNA upstream 946101 8132363 ~ 8132704 (-) True G222367
TU263294 lncRNA upstream 976371 8162633 ~ 8162848 (-) True G222377
XM_026924337.2 mRNA downstream 5249 7163957 ~ 7172748 (-) False zgc:112083
XM_034310681.1 mRNA downstream 5394 7163957 ~ 7172603 (-) False zgc:112083
XM_026924335.2 mRNA downstream 5395 7163957 ~ 7172602 (-) False zgc:112083
XM_026924334.2 mRNA downstream 5637 7163957 ~ 7172360 (-) True zgc:112083
XM_026924333.2 mRNA downstream 5641 7163957 ~ 7172356 (-) False zgc:112083
XM_026923930.2 mRNA upstream 1538 7187800 ~ 7195208 (-) True thap12b
XM_034310678.1 mRNA upstream 12569 7198831 ~ 7225546 (-) True dyrk1ab
XM_026924862.2 mRNA upstream 43656 7229918 ~ 7253606 (-) True alcamb
XM_026924739.2 mRNA upstream 90186 7276448 ~ 7283973 (-) True LOC113532980
XM_034310861.1 mRNA upstream 168918 7355180 ~ 7365143 (-) True LOC113532840
TU261846 other downstream 1153686 6021220 ~ 6024311 (-) False dynll2a
TU261738 other downstream 1374119 5797985 ~ 5803878 (-) False LOC113532612
TU261666 other downstream 1467106 5710098 ~ 5710891 (-) True G220990
TU260466 other downstream 3361210 3811560 ~ 3816787 (-) False LOC113544484
trnap-cgg_8 other upstream 9261 7195523 ~ 7195594 (-) True trnap-cgg_8
XR_004579456.1 other upstream 206153 7392415 ~ 7463499 (-) True zgc:77784
TU263800 other upstream 1754756 8941018 ~ 8946899 (-) True G222809
TU264952 other upstream 3121798 10308060 ~ 10312487 (-) False LOC113533081
XR_004579509.1 other upstream 5754648 12940910 ~ 13007559 (-) True nf1a

Expression Profile