RNA id: XM_026923943.2


Basic Information

Item Value
RNA id XM_026923943.2
length 4103
RNA type mRNA
GC content 0.43
exon number 6
gene id caln1
representative False

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 6233248 ~ 6298950 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGGGAAAGCAGCAGAGCAGCTCGCGCGTCAATAGAGAAACAATTAGAGCTGAACTCCTGCTCTGTCAGCGATGGTTATTGATCGGTTTTGTGGCAGTTTTCCCTCCAGCGACTGTTAGTGGTCACCTCTGTGGTGAGCAATACTTTCCTCATACACCTTTGGATGTCCTCAGCTGTAAGCTGTCACTTACGGGGGAAAAACCCGCTCGAGCTGCCTTTCCGTGGCGGATGTGGGGATGCCGGAGAGCCGCGGGGATTGACGGGAATTCGATCAAGCGCTTGCTTTTGCTCTGACTGGAAGTAGGACGCGGTTTGGACTCATGCCGTCCCCAGCAGCGGAGTAGCCTTTACACCCACCAGCGAGTGCACAGCTTTCAGCTACAGCTGACATTTACTGGCTTTATTTCTGCTCATTCGGGTCGGATGTCGGAGCGGATCTGAATTCCCTTCCAAACCCTGGATATTACTTTTAAAGGGAGAAGATGCCCTTCCATCATGTGACGGCAGGGCTGCTGTATAAAGGCAACTATCTGAGCCGCTCTCTGTCTGAACGCAGCGATAGCGACCAGCTGGCTAGCATCTCTGCAGAGGAACTGGATGAAATCCGTGAGGCCTTTAGGGTGCTGGATCGCGACGGCAACGGCTTCATCTCCAAGCAGGAGCTCGGCATGGCCATGCGCTCACTCGGGTACATGCCCAGTGAAGTGGAGCTGGCTATCATCATGCAGAGACTGGACATGGATGGGGATGGACAGGTGGATTTTGATGAATTCATGACGATACTGGGCCCCAAACTTCTGTCCTCTGAAACACGGGACGGCTTCCTTGGAAACACAATAGACAGCATATTTTGGCAGTTTGACATGCAGCGGATAACATTAGAGGAGCTCAAGCACATCCTGTTCCATGCCTTCCGGGATCACCTCACAATGAAGGACATTGAGAACATTATCATTAACGAGGAGGAGAGCCTGAATGAGAATTCAGGGAATTGCCATACAGAGTTTGAAGGAGTCCATCCAACAAAGAAGAACCGACAGACATGTGTGCGCAAGAGCCTGATCTGCGCCTTTGCCTTGGCCTTCATCATCAGTGTTATGCTTATTGCGGCCAATCAGATGCTGCGCAATGGAATGGAATAGCAACGCCACTGTGAGCAGGGGTGTGTGGGCGGAACCTGCATGTGCATGTCCGTCAGAGACGTCATTCCCTTCtgcctgaacacaaaaaaagcCTTCAACCTGCAACCTTCAGACTAAAGAAACCAAACACCTCGTCAAAAGAATGGTGGAGTGTTTTTCTGTCAGGAATGGCAGCCAGCAGGGGCCATGCGTTACTGAGTCTCCTCTCCACCTCACTGGCAGGGACTTTAAAGGGCTGACTTGTTCTCTCgttttttcccttctcttccCATGCCATCTCTGTTTCCTCAGTGCAATAACCTGTAGAAGTCTGCAAAAACCTCTCCAACATCCAATTTTCATCTCCCATTTTCATCAGGGATGTGCTGAAGAGCTGCTTATAGGCACAGACATGCCGGCAAATTGTCAAAGTTTTCAGTGGTAGTCACTCGCCTGAGTACTTTTTACAGCTTTGAGAATCCATATGTCTAAACTTCTGTTTATTATTGGTGAGTTGTTTCTCCATATGGTCAGTATGTGAAACGAGCCTGCTGAAAGATTATTcttgatattattttaatagtAGAGCAGGGTTTTTGCTCATGCCATATTGTTTGTGCTTAATATTCTAAATCGATGTTAGATTATCTTAAGGCCAGTTTATCTCTGATTGCCCTTGTAGAAAGACCTCTGGTGATGCTCTTATCTCTTATGGTATTTTCACACTTTGCCCAAACACTAGGACCTGGACCCATAATtgattctgggcttgtttggTGGAAGGTGTCACACAGAAAGTTATTTCCAAAAACTGCAGAGAAATTACACAAGTTTTAGGGATGCACCAGTGCAATAACTGTATCTGCATCAGAGCAGTTACTGGCCTGACCCGCCGGATTGGTATCTTGGATGTGATATATTTTCCATTCAAATCCACTGATGCTATGCTCCTGGTGCTATGCTTCCATTCCAATCCACCTATGCTATGAATGCATAAGACATTGTTAGCGTCATTGactcctgattggctgctgacTCCTGCCATTTACCTATGTAGTCAGACTTATTTCATTCCCAAGGTTTGGATGCAATGATGTTTGAGATGCCTGAGCTGGCTTAAGACCTATACATACAAATTTCTTGCCAATTCCAACCCCACACCCCTGACAAAGCATTAGgaattactattacaggattgtAAGGAcaactcacagcagctcaggaacatcatatTATAAGGCATTTTTCCCCCTGATTCAaactaacaagaaaaaaaaaatcctacacactgtagctttggtgtattatttattagtgtttCTTCACCTTTATTCCAAACTCTGGTTGAAGCTATTTGCTTATATTCTAAAAGAATGAATAATTTCTATGAGTCACTTGGTTCAGTTGCTTTCTTTGTTCAATGTATCAAAGTATTCCGTCTCCTCTGTAGACCAAAGCGTGTCTTTCCCCACCATTTACTTTGTAGGACGCCCAGCCCCAGGAGCAAATCGCTTTCACACATGGCGCAGCCTGTTTTTGCGAACTACAGAACACCATTTATAAGTTTTCTGTTCCACACACTGGTTTAAAAAAGTCTTCATCAAACATTCCAAACTCCTACCAAACGTATACCAAAATACAACAGacaaaagtgtgaaaatgcccTCAGTCTCCAGCCTGTGGTGGTAGTTGACAGTGGCTTAATGCCTCCAGATCAAAGCTGCTCTCTGAGCTTCTCCTTTCATCACAGTAAACCCTCAATAACTATTAGAGTGATGTTTCATTCCAGAAACATAATCTAAACTGAAACATATACGATGAAAATAGGTTTTAACTTTTGTGTCAGACTGTTTTTTTGTATTCCTTGTGGATGTAATTTTACCAGatttttaaaagtcttttttttttaatgaccattTATATTTGACTGCATTTCTCTGCATTTCTTCTGTCTAACTGCAGAATGGTACTGTGGATTTTATGGCATGTCATCCATAATCACAAGCTTTTTCAACAATGAATCGTTAATTTGCTTGGTTTGACAACCGGGCCTGTTCTgtgtctgatgcagctcattttatttgtgtgttttgttttgtttttttttgtccatgagAATACTGGTCTCCTGTATGTGTAAGCAGCTCTTTCTccccttctttttttaaaggactTTGCTTCATAATGCATGTGATCTTGTAAAACTGTGTACATAGATGTCTCATGTAGTCACCTGTGTTAAGTGATATGTATATGCATGACTGTGGACAGATCAGTATTTTCTGCACAGACAGTGTCAGTGGGCACAGAGGGGGCGGCTGAACCCAATACCAATGCGCCAGCTATCAGCTCCTCCAGTAGCCTTTGACTAAAGCCATATTAGTCTGCACAGATGTACTGggaaacacacatgcattttcTACTCCTTTAACAGCGAGaactgctgatgtgtgtgtggagaaataCCATCACTCTTTTGCACGGAAATGCTAATCCTCAAGCAAGGATTTGTTGAGTTCAAACAATTACCGTGGCTCCATCTGGTGGTTCATGTATGAACTAATTCCGTAACAGTATTAGGTATTGTGTTTGTCCTCATGTTGTCTGTCTCAATTGGATAATAACATTAGCTTGTAGCATTTGATTATATAAAAGCAGGGAGAGGAAATGGGACACTGTACCATATGTGTTTACATaagtagattatttttattaccacCATTATGGAGTAAGTGTGCAGATCTATAGCTAGACTGTATTCAGGAGAGAATGTCGTTCTACATGTGCATTATATTTTGGATtgaatgttttcattatttataacGGAGTTGTTACATTTAAGACATTTAAAAGGTCCTACACtggaaataaattttaattcgTCCTTTGGTgtggatatttttaaaaagtgaacatGAATAACTGGATGGAGCCAATGattcagaattattattattattattattattattataatagttT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261982 lncRNA downstream 28318 6203064 ~ 6204930 (-) True G221245
TU261950 lncRNA downstream 140814 6091913 ~ 6092434 (-) True G221214
TU261757 lncRNA downstream 362621 5870401 ~ 5870627 (-) True G221068
TU261709 lncRNA downstream 437795 5795128 ~ 5795453 (-) True G221026
TU261600 lncRNA downstream 633873 5588282 ~ 5599375 (-) False nectin3a
TU262213 lncRNA upstream 35163 6326091 ~ 6416808 (-) True G221450
TU262227 lncRNA upstream 125954 6416882 ~ 6417625 (-) True G221461
TU262210 lncRNA upstream 222900 6513828 ~ 6514965 (-) True G221448
TU262299 lncRNA upstream 348115 6639043 ~ 6639829 (-) False LOC113532805
TU262406 lncRNA upstream 396661 6687589 ~ 6688311 (-) True G221618
XM_026924885.2 mRNA downstream 44878 6182048 ~ 6188370 (-) False fam222bb
XM_034310827.1 mRNA downstream 45192 6182048 ~ 6188056 (-) True fam222bb
XM_034310492.1 mRNA downstream 71933 6158848 ~ 6161315 (-) True txndc17
XM_026924411.2 mRNA downstream 76397 6094670 ~ 6156851 (-) True nxn
XM_026924604.2 mRNA downstream 146158 6083740 ~ 6087090 (-) True glod4
XM_026924831.2 mRNA upstream 14430 6305358 ~ 6382839 (-) True tyw1
XM_026924830.2 mRNA upstream 14430 6305358 ~ 6382836 (-) False tyw1
XM_026924636.2 mRNA upstream 95251 6386179 ~ 6394307 (-) True zgc:103681
XM_026924174.2 mRNA upstream 156197 6447125 ~ 6488585 (-) False hip1
XM_026924173.2 mRNA upstream 156197 6447125 ~ 6488585 (-) True hip1
TU261846 other downstream 208937 6021220 ~ 6024311 (-) False dynll2a
TU261738 other downstream 429370 5797985 ~ 5803878 (-) False LOC113532612
TU261666 other downstream 522357 5710098 ~ 5710891 (-) True G220990
TU260466 other downstream 2416461 3811560 ~ 3816787 (-) False LOC113544484
trnap-cgg_8 other upstream 904595 7195523 ~ 7195594 (-) True trnap-cgg_8
XR_004579456.1 other upstream 1101487 7392415 ~ 7463499 (-) True zgc:77784
TU263800 other upstream 2650090 8941018 ~ 8946899 (-) True G222809
TU264952 other upstream 4017132 10308060 ~ 10312487 (-) False LOC113533081
XR_004579509.1 other upstream 6649982 12940910 ~ 13007559 (-) True nf1a

Expression Profile