RNA id: XM_034310502.1


Basic Information

Item Value
RNA id XM_034310502.1
length 1517
RNA type mRNA
GC content 0.46
exon number 11
gene id rskra
representative False

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 6035073 ~ 6047606 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGTCTGAGCATCAAATCTGAGCTGGAATGACACTCTCCTGTTTTGAAACACTAAATGCGGTGTAAGAAAGTGCTTAAATGaagttttttaaacaaagaattgCCATCTGAGTTCCAGTAGCCCACAGGAGCGATTATTTAATGGTGATTTGATGAATAAGAAGAACATCATTCATTTGTTGACAACATGCGCGTGCTATGGGCGGTGCTGTGAGCAAAAACAAGACACCTTTCTCATTAGTGGAGAAGAGGAGTTTGTCCAGTAAGCAAAGGTTCCTGTCTCCCCATGATGTACTTGTCCAAAGCAGTCCATTGAGGCAGCAGAGTGACCAGTGCACATCATCCCAATtcaataaatgtacaaaaagtcAAGAGACAAATCCTCTACCTTCATCCACTTCCATCTTCCTGCCAGAATTTCCGCACCGCGAGGGGCGACCTGCACATTTACAGGTAACTGGGGTAATAGCGAAAGGATCATTTGGCCCTATTCTGAAGGTGAATGACTCGGCAAAAGGGAAGACCTATGCTATAAAGCGGCAGCTCAAACACGCTTTTGTCCTCGGTCTGGAGGACTGTTGGCAGAGTCAGAACAACCTCTTCGTCAtgtgtgattactgcagcaCTGGAGATCTGTACACCTACTGGATGCTAACTGGCCAGTTTAAAGAGAGGGAGGTTCGAGTGTTTGCTGCTGAACTCGGCAGTGCTTTAGGTTTTCTTCATGACTTTGGGATAATGCACAGGGATTTGAAGATGGAGAACATCCTTTTAACTGACCAAGGTCACGTCTGcctgggagattttggactgtcTCGTCGACTTGAGCGTGGTGAAAAAGCATTTACAATCTGTGGGACAATCCAATACATGGCTCCTGAGGTTCTGACTGGGGGTCCTTACAGCCATGCAGCAGACTGGTGGTCCCTGGGTATCCTGTTATACACACTGGCTGAGGGAGAGttCCCACTTCCTCCAGAGTCAGACCACAGCGGCATGCTGACCAAAGTCACTGAGCATTCTTATGAAATGCCTCTGAGCTTCAGTCCTGCACTGGCCCTGCTACTCACGGAGCTCCTATGCAAGACCCCCATGCGACGTCTGCGCTGTCTGGAACGCTATATGAGTCAGAGGTTTTTTAATGGCTTCTCCTTTGACTCTCAGGTGCTGATGAAGAGTCCCATTCTACCAATCCTTGAGCTCAAGGATCACCCTAATCGGCCAGAGATATCAAAGAGGGGATTAACATTCGACCAGCTTCAGGACTTTGAATGTGATCTCTTTGACCCTCCTTCCTCATCCACAGATTTATCGCCTGCTATTCCTCACCAACACTGAGGAGACCTCAGGTTCTAAAGATGCATATGGTGCAATATCCTCAACCATTTCTAGACAAGAACCAAACAAATTGacaatctatatctatatctatatctatctatctacaatatactgtatatatgaactACAcaaacatatgtatatatgtggaGGGAAAAACACAGCTATAGATGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261757 lncRNA downstream 164446 5870401 ~ 5870627 (-) True G221068
TU261709 lncRNA downstream 239620 5795128 ~ 5795453 (-) True G221026
TU261600 lncRNA downstream 435698 5588282 ~ 5599375 (-) False nectin3a
TU261547 lncRNA downstream 531131 5503040 ~ 5503942 (-) True G220884
TU261527 lncRNA downstream 546065 5488775 ~ 5489008 (-) True G220864
TU261950 lncRNA upstream 44307 6091913 ~ 6092434 (-) True G221214
TU261982 lncRNA upstream 155458 6203064 ~ 6204930 (-) True G221245
TU262213 lncRNA upstream 278485 6326091 ~ 6416808 (-) True G221450
TU262227 lncRNA upstream 369276 6416882 ~ 6417625 (-) True G221461
TU262210 lncRNA upstream 466222 6513828 ~ 6514965 (-) True G221448
XM_026924004.2 mRNA downstream 1562 6029246 ~ 6033511 (-) True aldoca
XM_026924005.2 mRNA downstream 1622 6029246 ~ 6033451 (-) False aldoca
XM_026924598.2 mRNA downstream 6470 6025463 ~ 6028603 (-) True srsf1a
XM_026923900.2 mRNA downstream 10720 6021145 ~ 6024353 (-) True dynll2a
XM_026924653.2 mRNA downstream 31724 5989418 ~ 6003349 (-) True hnf1ba
XM_034310569.1 mRNA upstream 1847 6049453 ~ 6080648 (-) True LOC113532842
XM_026924604.2 mRNA upstream 36134 6083740 ~ 6087090 (-) True glod4
XM_026924411.2 mRNA upstream 47064 6094670 ~ 6156851 (-) True nxn
XM_034310492.1 mRNA upstream 111242 6158848 ~ 6161315 (-) True txndc17
XM_026924885.2 mRNA upstream 134442 6182048 ~ 6188370 (-) False fam222bb
TU261846 other downstream 10762 6021220 ~ 6024311 (-) False dynll2a
TU261738 other downstream 231195 5797985 ~ 5803878 (-) False LOC113532612
TU261666 other downstream 324182 5710098 ~ 5710891 (-) True G220990
TU260466 other downstream 2218286 3811560 ~ 3816787 (-) False LOC113544484
trnap-cgg_8 other upstream 1147917 7195523 ~ 7195594 (-) True trnap-cgg_8
XR_004579456.1 other upstream 1344809 7392415 ~ 7463499 (-) True zgc:77784
TU263800 other upstream 2893412 8941018 ~ 8946899 (-) True G222809
TU264952 other upstream 4260454 10308060 ~ 10312487 (-) False LOC113533081
XR_004579509.1 other upstream 6893304 12940910 ~ 13007559 (-) True nf1a

Expression Profile