RNA id: XM_026924104.2


Basic Information

Item Value
RNA id XM_026924104.2
length 6363
RNA type mRNA
GC content 0.39
exon number 14
gene id msi2b
representative False

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 12679407 ~ 12910854 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGGGAGTGGGAGGAGTCAGGCAGAGCTGAGCCCACGTGTGACGCGCGCATTCCCGGCTCAGTGCGATTCGCTTTAGCGGCGCTCCGGGCTCCGTTCGCTCTGACTGCGCGCCTTTTAGTTTGCTGCCTGTTTTTAGTTGGGTTAGCGATGGAGGGAGACGGGAGCCAAGCCACGTCCGGGAGTCCGACCGATTCGCAACACGACCCAGGTAAAATGTTTATCGGTGGCCTCAGCTGGCAAACTTCACCAGACAGCCTTAGAGACTATTTTAGTAAATTTGGAGAAATCCGAGAATGTATGGTGATGAGGGATCCCACCACCAAGCGCTCCAGgGGATTTGGGTTTGTTACGTTTGCAGATGCGGCCAGTGTAGATAAAGTTTTAGGTCAACCTCACCATGAATTAGACTCAAAGACGATTGACCCTAAAGTTGCCTTCCCGAGACGTGCTCAACCCAAGATGGTCACaagaacaaagaaaatatttgtaGGCGGATTATCAGCTAACACAGTAGTCGAAGATGTGAAGCAGTATTTCGAACAGTTTGGCAAGGTAGAGGACGCCATGCTTATGTTTGATAAAACCACAAATAGGCATagagGATTTGGCTTTGTAACTTTCGAGAATGAGGATGTGGTGGAGAAAGTCTGTGagattcattttcatgaaatcaataataaaatgGTAGAATGTAAGAAGGCTCAACCCAAGGAGGTGATGTTTCCCCCAGGGACGCGAGGGCGAGCCAGGGGTCTACCCTACACCATGGATGCCTTCATGCTAGGAATGGGAATGCTGAGTTACCCAAACATTGTAGCGACGTATGGCCGTGGATACACTGGCTTCGCCCCGAGCTACAGCTACCAATTCCCTGGCTTTCCCGCGGCAGCGTACGGTCCGATGGCAGCGGCAGCAGTGGCAGCAGCGCGTGGTTCAGGCTTCCCCGATTACGGTTTCTATTCCACGACAAGTGACCAACGGGGGCCCCCCTTCTCCTTTGCGGACTATGGCTCCCTAGGCCCGCAGGCGGCTCAGCTGCTTCAAAGCGAGCATGCCACCTCGGCCTGCAACTCCCCCCTGCAGCACCTGCCCAGCCCGGATCAGTATAAGAGCCCAGGCACCAACCCTCCGCGGCCTGGAACTTTTCCTGGAGCGAGCAGTCCAGGACCCGTGGCTGACCTGTATGGCCCCACCAGCCAGGACTCCGGCGTGGGCAATTACATAAGCGCTGCTAGCCCTCAACCTGGCTCCGGCTTTGGCCACGGTATTGCTAGTTTATCGGGAGGTCCGGGGAAGACAGGCCGCAGTTTCTAACTGGTTTTGTGTACAGGTAACGGCCATACAACTCCAAGCACTACAGCGTGGAACAGACAAGGACGAGCTGAGATGGCAGGATCTGGAGAACAAAAGAAATGTCTGAAtcatctcagaaaaaaaaacaacattaatctGCTGTACTATAATGAAAACCTggcttttggatttttttctcctaatgTATCCCCATAATCTAGGATGATGTTGTCGTTTTGtcctttttcacttcttttcccTGTTTCATTGAAATTGTTTCGTTAACATCTTTAATCATATAGTCTGAAGCAGCCTCTGAGGTTGACtagttttgaaatattttcattatatacTATGTTCTCTGATGAGAAGAActatgtaaatgtacattttctctctttttttagtGTAATGACATCACTATAGTTGTCTCTTCACTCTTGGCTCTTTGTAATAATACCCgatgtttcatgttttcagatttcatttcattcaagcAAGAACACTGAAGGACTTGCTTCaaaaatcatgatttttcaACCTTTAAAAGAGCAATGAGAGGGTAACTAACAAATCTAAGTAGCTCTGTTCTTCGTTTCGTGTGATGTcttgttatcattattatctaTTTTGGGCAATAAGAGGACTACAATATTTTCACAGTccttttttataaatgttttttgttgttgtcgttgtcgataaaagaaaaaaatacatttccttTTAATACTTTgtgaaatgagatttaaaaagaaaaaagttatgaaatctgtaaatattactCATTACTACATCGAACCATCTCAGAGAGAACCATATTTTTGTGATGGTGTCCTAGAGGTCGTACTGTGCTCAAtctgaaatatgtttaaaaaaaaaaaaagaaagaaagaaaaaagctctTTCAGGCTCGGTGCAGTAACTGAAATCCATTTGTAGCACAAAAGCCGTGAGAACCCGACTGCAGACACAAGcccaataaaacactgttagcTCGCTCTGTAAATACTGTTGGCTTTCTAACTGTGCAGGTAGCAAACCAGCATATTGACTAGATTGTGAGATCAGATGTGCACAGCTTTCACAGAGAAACTACTTTACAGCATACACACAAATCAGCATTGTATAAACAAAATCGAACTGAAATCCAAAGCACatgtttgtttcatgttttttaagtaTCAGTGATGAAATTAGAGATTTTGTAAGaagtaaacagttttttttccttctcactttttttggttttaatttattttttcccgTAGTCCTAAAAAATAGTACACAGAACGCCTGATTTCGGAAACAAAAAGGCAATATTTCAAGatttttagtcatttctgaCTTACCGTGATCAATTAGGAACTGTTTTTGCACCATTACCTCAGTCCTGTGGGATGTACTTTAGAGGACgtaacaaattaatttattttatcgtgagacaaaataaaaaaaaaagattgtcttgaaattaaaaagaatCATTGCACTGTGAgaaagaatttattattttctatttgcaCATGTTAAAGGATGTTCTCTACCGTGGGTCATATGAAGGATTCGTATGGAAACGTTGTCCCTGCACGGTCGCAGTCttcatggctgtgtttgtgGAATAATCATTATTCCgggcattttatttttgtgcttctgATCTGCCAACGTTACAGCTAAGTTTATTGGTAGCAATAGTTGAAATCCTCCGATACACTGAAACTGAATGAAATCAGTAGCTGCTACACATATATGACGTACATGTTGGATCTGAAGAGATCGAAATGATGCTAAAATATATGCTGAGTGAAATAAGAGTGATATTTAAGAGTGTAAACTGACTGATATATGCTGTTGTTCATCCTTGCTgaagatgtgttttattttcatttttctcccttttttcacaattttactGAACTAACACGTGATTCGAAATGCTGAATCCTTTTTTTGTACATCTcgggaaaaaaaggaataagTAAGCGCAGCGCAGAAAGACGGCTTCCTGCTAACTGTTCAGACTGTTTCAAAAGACAAAACTACTCAAAACAGCGCGATCCCCAACACAGTTTGAATATCAACGGGGGatttttattgctatttttgTGGAAGTGAATGACTATGTTAAATATGTTGCTGACTATATTACGGTTactatgtactgtatttatCATTTGATGATCTCTCCATTCCCTGTCGCATCATCCAGTAATCTTATGTTGATCATTGTATTTcagtaatgtgtaaaaaaaaaaaaacggaaaaaaaaaaaaagaaattacctTGTAAAAGAGTGCTGTCTTTGATGCCAGTGTAGTGGTCTGTACATTTCTCTGTTGATCCGTTTCACTCCTCTCTCCCCGTTTTTTGCCCCGCCTTTGTCTTCTTGCTCTTTCGCTAtatctctgtctcactctctcttagTGAATAGTCATAGATGTTATGTAATCAACGTTACAGTAGAGCTGTAGTGATTAGTAGATTTAGGACCAGTAAGGATAGAACTTTCTCTTGataatcatttaaacaaacaaacaaaaaaaatgctgaacatTGTTTTCATGGCGTTTCACCTTtactttgtctttctttgtgttcattgggttgttttttttttctgattctcACATGGTTTCAACTAACCAAAGCTCTCATGATGAAAtccagaaaaaagaaattggtGTAAGACAGAGTTGTAAACAAGGCATTAATTGGATCCCCACCCTTGAATGTTTGAAAAGGGGTGTGCCATACTACCTTAAATGCTAACGCTTGATAtgcaaaactgttttgttttctttctttttttaagaggGACGCAATTTATAATTATGGAAAGGATTTTATTacatgaatggaaaaaaaatcatatttttttagtacattCTACCTGAGTAATGATGATCTAGCCTAATAATTATAGATACGGATAAAACTGTAATAGGTTTTGATATTTATACTCTTCAAAAAGTCCActactatttttaaatacttttttgtgtCTATGTGTCTGCATagattcatatatattttaggTTTCGGTCATCTTAAACGTTATTTTTGTACGCTGTAACCTTAGTGCCAGTTCTTCATGTTAATCAAAGCTAAGGCTTAAtcacagcaacaaaaaaactaattatTGGAATCTTAAATACTCATATAGCATATGAAACAAAACAGTTAGACTAGCAGCTGTTACTGTTAATAACTAAACAGTTTTATTAAGACAGGTTTGATTATTTATTGCTAGCAGTCATAGAAGAATTCAGCGAAACTTACAATgaagtctgaaatattttttctgaatGAAATCTGTTCTCAGGGATTATGAATGTAAGCTAATTCTAATCTAACTCCTCTATATGTGAGATTTAGCTCATAATTACTTGTGGATTCTGTGTCTCTGATACGTGCTGTCAGATTTCATTCAGACACAAACACTGAGCCAGTTTTCCTACATGCTCTAGTACTGAGTTTAACCTGCTGTCGGTCAGAGAGAGGTTCTTCAAGGGGTCTTTGGATTGTCAGAAGTTCTAGATTCCTAAAGAACCCtatctgatagggaaacactgttgtagagttttttttttaaacagaacctttaagtgttttctgaaaaaaaaaaaaaaaaaaactgtttatggCCCTAGATTTGACCTTTTACACACATGGCATTAAGGACTACATAAAGTATATTTATTAATCTCTGTTGCTATGTGAAGTTGTTGCAAATTATGACttcattacaaacatttgtatTGTTTCTAATTTACAGTTgccattattttataaaataagcaAAGCCTTTTGTGCTCACGATTTGCATTCAGAGCTTTCTCAAATGAAAGATTATACTTTCACAGAAAATGATTATAAACAGTATAAGATTATGAGTTTTTCAATCTTATAATCACGATCTGGCTCTTGATTAAAATGAAGGCTGGCAACCCTTTCTGATAGCCTTCTATAATGTCTCTCagtcagtttctttctttctttctttatatatatttttttcttttctaatttgaTCTTGTAGCTTGGACTTTAAGGTAGCATGGCTCTGttgccattattttatttttccatcgACAGCCGTTTACAGCAGATGAATGTTACACATCTTGCTAGACTAGTTAAATCATTGGATAATTGttggttttggaaaaaaaaaaaggaaaagaaaaaaaaatgacctggAAGGTGTTGGGTGATATTCGAAATGAACTACCGTATCCATTCAAAACTTGAATTTTGAGGCAAGTGCTAGGCAATGGCCAAAACGATCATCCCATTATTGAAGGAACAAACTActctgtctacacacacacacacacacacgctctgtAATGACATACTGTAATGACATATGTATATACTTGTATACAGATACaggatatatatgtatagtgtatatatctCTTTGTTAAATTGTTGAAGCTGCCTCATAATGCTTATTAATCATTTGTAGTGACCCAGAAAACTTTTGGGTCAGTAGTCTACGCTGAAATCATGTTTGAAAGTCATGTGTGAAATCACGTGTTGTGGAAAAGCTGCATTGTGCACTACTGGGACAGTTAGAAAGCCGGGAAACGTGTTAGTTTAGCTGTGTACGTGCCCCTTTAACTCTCTGGGGACACGGTACAGTTCACACGGCAGGTGTCACAGGGGAATGGTCTTTATTTCTGACGCTTCCTTCGGGAACTCGCTCTCCTGTTTTCCACCCCAGCTTTCGCCTCTCTGATTGCCTTGTCCATTCCtaacacttgcccattttttaaCGGACTTTTTACCGCATGAACTGACTGAACGGACTGACGTCTGAAAGCATCTTTCAGGTCTTCTTCTATGGCTTGCTTAAGCCCTGTTGTAAAATAAACTAAAGTGGATGGGGGTCTCTCACATCTCAGATGTGGaaagtataattttatatttgtattttcaaataattatgataataaaaaatgtttgtgaaagGTTTCCATCCTCTACTGTGGTCCAGAAATCAATGTGTTTGTCTggagaagattaaaaaaaataataataaagtaaactGTTTTGAAACA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266565 lncRNA downstream 243339 12435447 ~ 12436068 (-) False bcas3
TU266317 lncRNA downstream 289774 12389252 ~ 12389633 (-) False tbx4
TU266315 lncRNA downstream 317314 12360206 ~ 12362093 (-) True G224970
TU266054 lncRNA downstream 598328 12080300 ~ 12081079 (-) True G224746
TU266008 lncRNA downstream 703389 11973919 ~ 11976018 (-) True G224701
TU266669 lncRNA upstream 10120 12920974 ~ 12999031 (-) False akap1b
TU266798 lncRNA upstream 157932 13068786 ~ 13162208 (-) False G225410
TU266799 lncRNA upstream 157932 13068786 ~ 13175992 (-) True G225410
TU267043 lncRNA upstream 447956 13358810 ~ 13359021 (-) True G225619
TU267045 lncRNA upstream 453549 13364403 ~ 13364617 (-) False G225621
XM_026924230.2 mRNA downstream 40682 12435206 ~ 12638725 (-) True bcas3
XM_026924551.2 mRNA upstream 10109 12920963 ~ 12938519 (-) True akap1b
XM_034310632.1 mRNA upstream 30056 12940910 ~ 13007559 (-) False nf1a
XM_034310629.1 mRNA upstream 30056 12940910 ~ 13007559 (-) False nf1a
XM_034310630.1 mRNA upstream 30056 12940910 ~ 13007559 (-) False nf1a
XM_034310628.1 mRNA upstream 30056 12940910 ~ 13007559 (-) False nf1a
TU264952 other downstream 2366920 10308060 ~ 10312487 (-) False LOC113533081
TU263800 other downstream 3732508 8941018 ~ 8946899 (-) True G222809
XR_004579456.1 other downstream 5215908 7392415 ~ 7463499 (-) True zgc:77784
trnap-cgg_8 other downstream 5483813 7195523 ~ 7195594 (-) True trnap-cgg_8
TU261846 other downstream 6655096 6021220 ~ 6024311 (-) False dynll2a
XR_004579509.1 other upstream 30056 12940910 ~ 13007559 (-) True nf1a
XR_004579489.1 other upstream 159282 13070136 ~ 13080860 (-) True wsb1
TU267049 other upstream 456909 13367763 ~ 13368850 (-) True G225622
TU268481 other upstream 2901535 15812389 ~ 15844783 (-) True G226830
TU268676 other upstream 3208443 16119297 ~ 16165036 (-) False G226991

Expression Profile