RNA id: XM_026924110.2


Basic Information

Item Value
RNA id XM_026924110.2
length 3686
RNA type mRNA
GC content 0.49
exon number 30
gene id supt5h
representative False

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 10320831 ~ 10342885 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGCGGCGGCGCTGTTCCTCTGTGAGAGCCGGAAACGGAAACGGAAGCAGAATCTGTGTGAGGAGGCTGTTCAGTGAAAACAGCCGCAGTTTTCTTAGCGCGACCGGAGCTGTTTAAAACCAATCATACTTATAATCTGCATCTTTGCTTGTTTCTTTATTAACGTTGTTTACATCCAAAGgtgAAGCACAGTGATGTCTGACAGTGAGGACAGCGACTTCTCAGACAACCAGAGCGAGAGGAGCAGTGAGGCTGAGGAGGTCGAGGCTGAGGAGAATGAAGAGGATGAAGGGCAGGGAAGTGTTGCTGGTAGTGACAAAGCTGAAGAAGAGGGGGAGGACTtagaggaagatgaagaggagtatgatgaagaagaggaagaggatgatgaCCGTCCTAGGAAGAAGCCTCGTCATGGAGGCTTTATCTTAGATGAAGCTGATGTTGATGATGAGTATGAAGATGAAGATCAGTGGGAGGAAGGAGCTGAGGATATTTTGGAGAAAGCAGAGGAGGCTGAAGTTTCTAACCTCGATCCTGTAGCTCTGGATGAGGATCATTCAGGTTCCCGCAGACTGCAGAACCTTTGGCGAGATTCCAGAGAGGAAGCCCTGGGAGAGTACTATATGAGGAAATATGCCAAGTCTTCCGGAGGAGAACATTTCTATGGAGGATCAGAGGATCTTTCTGATGACATCACTCAGCAACAGTTGCTCCCTGGTGTCAAGGATCCAAATTTGTGGACCGTCAAATGTAAGATCGGTGAGGAGAGAGCAACTGCCATTGCGTTGATGAGAAAATTCATTGCCTACCAGTGCACTGACACACCACTTCAAATTAAATCAGTAGTGGCTCCTGAGCATGTGAAGGGATATATCTATATTGAGGCATATAAGCAGACCCATGTCAAAGCTGCCATCGAAGGAGTTGGAAACCTGCGAATGGGCTACTGGAACCAGCAAATGGTGCCCATTAAGGAGATGACTGATGTCCTCAAAGTGGTGAAAGAAGTTACAAATCTTAAACCTAAATCCTGGGTCCGGCTTAAAAGAGGCTTGTACAAAGATGATATCGCGCAGGTTGACTATGTGGAACCAAGCCAAAatacaatatcactgaaaatgattcctcGAATTGACTTGGATCGAATTAAAGCAAGGATGAGCATGAAAGACTGGTttgcaaagagaaaaaagttcAAGAGACCACCGCAAAGACTCTTTGATGCTGAGAAGATCAGGTCACTTGGAGGGGAAGTTAGCCATGATGGTGATTTTATGATATTTGAAGGCAACCGATATAGTCGCAAAGGCTTCCTGTTTAAAAgctttgccatgtctgctgtgATCACAGATGGCATTAAACCAACTCTTTCTGAACTGGAGAAGTTTGAGGATCAGCCTGAGGGCATTGACCTGGAAGTGGTGACAGAAACAACAGGCAAGGAGCGAGAGCACAACCTCCAGGCTGGGGACAATGTGGAGGTGTGTGAGGGTGAGCTGATCAACCTTCAGGGAAAAATTCTCAGTGTAGATGGGAACAAGATAACAATCATGCCCAAGCATGAGGACCTGAAGgaCCCTCTAGAGTTTCCAGCTCATGAGTTGAGGAAGTATTTTCGTATGGGCGACCATGTGAAGGTCATTGCCGGACGTTATGAAGGCGACACGGGTCTTATTGTTCGTGTTGAAGAAAACTTTGTCATTCTCTTCTCTGATCTCACAATGCACGAGcttAAGGTCTTGCCTCGGGACTTACAGCTATGCTCAGAGACTGCATCTGGGGTGGATGCAGGAGGACAGCATGAATGGGGGGAGCTGGTACAGCTGGATCCACAAACTGTGGGCGTCATTGTCCGGCTGGAGAGAGAGACCTTCCAGGTACTTAACATGCATGGTAAGGTGCTAACGGTGCGGCACCAGGCAGTGAATAGACGAAAGGACAATCGCTTTGCTGTCGCCCTGGACTCTGAGCAGAACAACATCCATGTAAAGGACATTGTCAAAGTCATAGATGGACCACATTCAGGCCGAGAGGGAGAAATTCGGCATCTCTTCCGGGGGTTTGCCTTCCTTCACTGTAAGAAGCTTGTTGAAAATGGAGGCATGTTTGTCTGTAAGACACGCCATCTTGTGCTGGCTGGGGGTTCAAAGCCTAGAGATGTGACCAATTTCACTGTTGGAGGTTTTGCTCCCATGAGTCCTCGAATTAGCAGTCCAATGCACCCAGGAGGAGGGGGTCAAATGCAGAGAGGAGGTGGTGGCGGTGGAATGGGCCGTGGCCGTGGAAGACGAGATAATGACCTGATTGGACAGACAGTCCGTATATCCCAAGGACCATACAAAGGTTACATTGGGGTGGTCAAAGATGCCACAGAATCGACAGCAAGAGTAGAGCTGCACTCAACCTGTCAGACTATTTCTGTGGACCGCCAGCGTCTGACCAGtgtTGGTGCTAAGAGACACGGAGGAATGACCTCCACTCACGGTCGGACTCCAATGTATGGTTCCCAGACACCCATGTACGGTTCAGGCTCTCGTACCCCGATGTATGGCAGCCAGACACCCCTCCATGATGGAAGCCGCACACCTCATTATGGCTCCCAGACCCCGCTGCATGATGGAAGCCGGACACCTGGGCAGAGTGGAGCTTGGGACCCCAACAATCCCAACACACCATCAAGGCCGGATGAGGATTATGAGTTCAGCTATGATGACGAGCCCTCTCCGTCTCCTCAGGGCTATGGAGGCACGCCTAATCCTCAGACCCCTGGCTATCCAGAAGTGCCCTCTCCACAAGTCAATCCCCAATACAATCCGCAGACCCCTGGAACTCCAGCAATGTACAATACAGACCAGTACTCTCCATATGCTGCACCGTCTCCACAGGGCTCTTACCAGCCTAGCCCCAGTCCGCAAAGTTATCACCAGGTGGCCCCAAGTCCAGTGGGTTACCAAAACACCCACTCACCGGCCAGCTACCACCCCACACCGTCACCCATGGCATACCAGGCAAGTCCGAGCCCCAGCCCGGTAGGCTATAGCCCCATGACTCCTGGGGCTCCATCCCCAGGCGGCTACAACCCTCACACCCCTGGCTCAAACATTGACCAGACCTCCAGTGACTGGGTTACTACAGACATCTTGGTGCGTGTCAAGGACACATTTCTGGATGGAGGAGTCATCAACCAGACAGGCGTCATCCGCAGTGTGACTGGTGGCATGTGCTCAGTCTATCTGCAGGACACAGAGAAAGTGGTCAGCATCTCGAGTGAACACCTAGAGCCTGTGACTCCGACCAAAAACAACAAGGTGAAGGTGATTTTGGGAGAAGACAGAGAGGCCACCGGTGTCCTGCTTAGTATTGATGGAGAGGATGGCATCGTCCGAATGGAACTGGATGAGCAGCTCAAAATTCTCAATCTCCGCTTCCTTGGAAAACTGGAAGTGTGAACAAATGAACTCTATACAACTGCATCACGGTCatcaggacattttttttattattattattatttgtggttTTGTGTCCCATCATAGAGTTAAATCAAGAGGTAATTCAAAtgacttgcattttttttttttttttttaattagtcagtgttttagtgGCTATAGATCATCACTGATGTCTTGCTTTCTGGCAAATGGATTCcatgtcaataaaaaaaactgtgcaatTTGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264865 lncRNA downstream 157459 10161783 ~ 10163372 (-) True G223676
TU264564 lncRNA downstream 219665 10100959 ~ 10101166 (-) True G223449
TU264558 lncRNA downstream 230841 10089643 ~ 10089990 (-) True G223443
TU264545 lncRNA downstream 238714 10081581 ~ 10082117 (-) True G223437
TU264516 lncRNA downstream 281473 10038844 ~ 10039358 (-) True G223410
TU264978 lncRNA upstream 69573 10412456 ~ 10412680 (-) True G223766
TU265027 lncRNA upstream 217543 10560426 ~ 10611848 (-) True G223808
TU265054 lncRNA upstream 293273 10636156 ~ 10636794 (-) True G223827
TU265074 lncRNA upstream 365369 10708252 ~ 10712073 (-) False appbp2
TU265085 lncRNA upstream 413615 10756498 ~ 10761733 (-) True G223855
XM_026924926.2 mRNA downstream 8315 10308050 ~ 10312516 (-) True LOC113533081
XM_026923881.2 mRNA downstream 102460 10211586 ~ 10218371 (-) True tnfaip1
XM_026923875.2 mRNA downstream 111860 10163407 ~ 10208971 (-) False sgsm2
XM_034310511.1 mRNA upstream 2707 10345590 ~ 10356732 (-) False il15l
XM_034310508.1 mRNA upstream 2707 10345590 ~ 10356731 (-) True il15l
XM_034310510.1 mRNA upstream 2707 10345590 ~ 10356730 (-) False il15l
XM_034310509.1 mRNA upstream 2707 10345590 ~ 10356730 (-) False il15l
XM_026924179.2 mRNA upstream 14666 10357549 ~ 10400261 (-) True plekhg2
TU264952 other downstream 8344 10308060 ~ 10312487 (-) False LOC113533081
TU263800 other downstream 1373932 8941018 ~ 8946899 (-) True G222809
XR_004579456.1 other downstream 2857332 7392415 ~ 7463499 (-) True zgc:77784
trnap-cgg_8 other downstream 3125237 7195523 ~ 7195594 (-) True trnap-cgg_8
TU261846 other downstream 4296520 6021220 ~ 6024311 (-) False dynll2a
XR_004579509.1 other upstream 2598027 12940910 ~ 13007559 (-) True nf1a
XR_004579489.1 other upstream 2727253 13070136 ~ 13080860 (-) True wsb1
TU267049 other upstream 3024880 13367763 ~ 13368850 (-) True G225622
TU268481 other upstream 5469506 15812389 ~ 15844783 (-) True G226830
TU268676 other upstream 5776414 16119297 ~ 16165036 (-) False G226991

Expression Profile