RNA id: XM_026924136.2


Basic Information

Item Value
RNA id XM_026924136.2
length 2377
RNA type mRNA
GC content 0.42
exon number 8
gene id spint2
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 10413292 ~ 10426287 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAAGTGAACTGCTGGTAAGTGGAGCGGAAGACACCTGTGTGAATTACACGCACATAGATTTGTAACTGCGACGAAAGCGACTCTTACTGTCCAGCAGATATAAACTGGGCCATGGCTCGGTTGTTTCTTTTAGCTTTTGTGTGCCTTTCTGGCGCAGGATTAATTCTCGGGCAGGAAGGATGTGTATTCACCGAGCTGAACCAGGGCTTGAACCCGAAATCCTGGGACGCTGGTGCGAACTATTCAGCTCACCTGGCCGACATTTCCAACGAGCGTGAGTGTCAAGAGGTTTGCTGTACTAGAGAAGACTGCCACTTAGCCCTGATTGAGACTCCAGCTGATGGCTCACCCCAATGCTTCCTCATCAACTGTATGAAAGATGGCaaagatgtttgtgttttggaagCGCGCGACCACTCCAAAGCATACCTCAAGACTCAGGTCTCAGCCCGCGCCAACAGCTCAACAGATTATTGCCGTCTTGAAAAACAAGTAGGTCGTTGCCGGGCATCCTTCCCCCGATTCTACTACGATGCCACTGACCAAACctgtaaaatgtttgtgtatgGGGGATGTGAAGGAAACAGCAACAACTTCAAAACAAAAGAGGAATGTCAGAATGCTTGTAATGGCGTAacagCTAAATCTTCTGAAGCTCCCTTGGCTGAAATGACATCAGAAGAGTATGCAGAGAAGTGTCTGGCTGGACCACAGGTAGGGCCATGCAGGGCCTCAATCCCACGCTACTACTACACAAGCGGCACATGTAAACCGTTCAGATATGGTGGATGCCGTGGAAATAAGAACAACTATAACTCTGAGGAGGAGTGCATGAAAAACTGTACAGTGAAAATTGTGGATTCCAAGAAAACACCTGAAGATGAGAGATATGCGGCCTGCATTGCGCCGGCTGACTCTGGGCCATGCCGTGCCGCTTTCCAGATGTTCTACTTTGAGCCGAGTACTCAGTCTTGCCAGGAGTTCATCTATGGAGGCTGCAAAGGCAACAAGAACCGTTACAGCACCCTGGAGGAATGCATGTCCAATTGCGCTGGGAAAGATGGGGTATTTGAGGAGCATGGACACCACAGGGCTCGCTGGACTCCAGccTTTTTCCTGGTCGCCACTCTGGCCATCATGTCAGTCGTGCTGCTTGTTGGGTTGTTCCTGATCTCAGTGCGTCGTGTGAAGCATCAGCGCCTCCTGCTGCTGGATGACAAGCAAGAGCTACTACCTGAGGAGCACATTCCTGAGGAGGACGTCCGCAATGACTCCCACTAAatccttttccttctctctttcccctcTCTGCTACTGAGCACCTATATATCTACACTCCGATATCTGCACTACACACAGCCTGTCGCACACATCTGGGGTTTGGGAAAGCTTTGAGAAGGTAGGGCATTAGTACAAAGGCAGAATATTGGACCCAGTGGTTATAAGTATTTGgcaaaaatgtactgtataggTGAAACTACACTGACATACCAGCTTTAATCAGATTCATTATGTATCATGCAAGAGAGATGAGCGATTGTGATTGTAGATGATGATTAGTAGttctttaaaacactgaaactttGAGTGAGAAACTTAGTCTTCAACTGTTTTTTTAGTGATGGAGAAAAATGTGGTAACATtcctttctctttgttttattttttatagtataaaacaaaaatcagcaaatgagcaaataaatttaatttcatttgctCATTAGAATATAGTTTCTTCAAAATAGTTACCTTGGCATACTTTGGAAAATGGACAGATTTTTAGAAGGTTCATTAATGCATTCCCTCATTCCTGTCTCGATGTGTGTACACTAAAATACAAATggattttctatttttcctttttaatttattctacCTGTTGATAGAACAATCATTTTGGGTGATTACATATATGTGATATATCCTTCTGCATAAATATTCTTAGAATAAGtggcttttttcatttttcttttaaataaagtgaaactTATTTAAACAGAATTAACAGCCAATGTTGTACAATGTGAAAGATAATGTGGACAAAGTAGTGTGATTATATAGGACAACTCTCTTTAGTTGATGGTACACTCCacttatttcagattttctacTGAAgataaaacagcacaaaaagattaaagattttaagagttaaagattaaaatatattagaaGATTAATTATCTGACTAGTATGAAACATAATAGTGGATTCTTAGCATATATATGTGATGTTTCTCACGCAAAGTGAGATGGATAACTACAATGGTTGAACTACTGAATGTGTCAAGCACACAGAATCTCCTTTGAACTGGAAATGGAGACATTACTTTGAAGTTAGCaatctataataataaagaaaacactTGACTTAA

Function

GO: NA

KEGG:

id description
K23421 SPINT2; Kunitz-type protease inhibitor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264978 lncRNA downstream 612 10412456 ~ 10412680 (-) True G223766
TU264865 lncRNA downstream 249920 10161783 ~ 10163372 (-) True G223676
TU264564 lncRNA downstream 312126 10100959 ~ 10101166 (-) True G223449
TU264558 lncRNA downstream 323302 10089643 ~ 10089990 (-) True G223443
TU264545 lncRNA downstream 331175 10081581 ~ 10082117 (-) True G223437
TU265027 lncRNA upstream 134139 10560426 ~ 10611848 (-) True G223808
TU265054 lncRNA upstream 209869 10636156 ~ 10636794 (-) True G223827
TU265074 lncRNA upstream 281965 10708252 ~ 10712073 (-) False appbp2
TU265085 lncRNA upstream 330211 10756498 ~ 10761733 (-) True G223855
TU265332 lncRNA upstream 643397 11069684 ~ 11069958 (-) True G224086
XM_026924179.2 mRNA downstream 13031 10357549 ~ 10400261 (-) True plekhg2
XM_026924180.2 mRNA downstream 23541 10357549 ~ 10389751 (-) False plekhg2
XM_034310511.1 mRNA downstream 56560 10345590 ~ 10356732 (-) False il15l
XM_034310508.1 mRNA downstream 56561 10345590 ~ 10356731 (-) True il15l
XM_034310510.1 mRNA downstream 56562 10345590 ~ 10356730 (-) False il15l
XM_026924366.2 mRNA upstream 56864 10483151 ~ 10488560 (-) True si:dkey-182i3.11
XM_026924819.2 mRNA upstream 113282 10539569 ~ 10542916 (-) True ckmb
XM_026924376.2 mRNA upstream 134270 10560557 ~ 10570176 (-) True ercc2
XM_026923931.2 mRNA upstream 146348 10572635 ~ 10574319 (-) True zgc:154093
XM_026924309.2 mRNA upstream 158552 10584839 ~ 10596711 (-) True zc3h4
TU264952 other downstream 100805 10308060 ~ 10312487 (-) False LOC113533081
TU263800 other downstream 1466393 8941018 ~ 8946899 (-) True G222809
XR_004579456.1 other downstream 2949793 7392415 ~ 7463499 (-) True zgc:77784
trnap-cgg_8 other downstream 3217698 7195523 ~ 7195594 (-) True trnap-cgg_8
TU261846 other downstream 4388981 6021220 ~ 6024311 (-) False dynll2a
XR_004579509.1 other upstream 2514623 12940910 ~ 13007559 (-) True nf1a
XR_004579489.1 other upstream 2643849 13070136 ~ 13080860 (-) True wsb1
TU267049 other upstream 2941476 13367763 ~ 13368850 (-) True G225622
TU268481 other upstream 5386102 15812389 ~ 15844783 (-) True G226830
TU268676 other upstream 5693010 16119297 ~ 16165036 (-) False G226991

Expression Profile