RNA id: XM_026924174.2


Basic Information

Item Value
RNA id XM_026924174.2
length 5886
RNA type mRNA
GC content 0.49
exon number 31
gene id hip1
representative False

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 6447125 ~ 6488585 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACACATCGCTAGTCTGAGGATTTCAGCTGGACTCCAGTCGCTCAGCTGCTCATTTAACAAAGCAGAAATGTAAAGTTggtgtaaagctgttttgatTTTGAGGTTAGCCAGTTACATGCGTGAGCCCAAACGAATTATAAGTCTCTATTCTCATTTCTCTCATATTTAGTCTCTTTTTCAGggcttttattttcattccaaCACCCGAACACTTGTGCTTTTAAAACAAGGGATAGCAGATCATACGCTGACCAATCAAATAGAAGGAAATGATCCTGAATGGGCGGGGCAAGCACATTTTCCTCCAATCGTAGGCCGCAGTGGAGGAGTCCTGCCGCTGGTTCGTTTGCTCCTCCGCAGGCGTTGGAGCCGTTCATTCCTGCGCGGTGTGTTTACTCAGACTTCAGCGCTTGTTTATTCAGTGATCACACTTCCAGCAGAGGGATATGTTCAGCAGTGACGCCTGAAAATAATGAGCTTTCGGGAGAACGTGGATGGAAACTTTGCGCTTACCGTCTTTTGGTTGTGTTTGTATTAACTCCCTGTAACCTAGTGCTCGTTTggttattattgtatatttttttggaaatggaCCGGATGAAGAGCTCCATGCAGCAAGTCCCGAACCCGCTGCCCAAAGTGCTGAGCCGCCGCGCTGGTGGAGCCAACAGCCTGGAAGTGGAGAGAGAAAACTTCGAGCGCAGCCAGGCTGTGAGCATCAACAAGGCAATTAACACACAGGAGGTTGCCGTCAAAGAAAAGCATGCCAGGACCTGCATCCTGGGAACCCACCATGAGAAGGGCGCTCAAACTTTCTGGGCAGCCGTCAACCGGCTGCCGATCTCCAGCAACGCCGTGCTCTGCTGGAAATTCTGCCACGTCTTCCACAAACTTCTAAGAGACGGCCACCCAAATGTCATTAAAGACTCGGTGCGGAACAAGGGAGACCTAAACGACATGAGCAGGATGTGGAGCCACCTGAGTGAAGGCTATGGGAAGCTTTGTAGCATCTACCTCAAACTACTCATCACCAAAATGGAGTTTCACATCAAAAACCCTCGTTTCCCTGGCAACCTTCAGATGTCAAACAGACAGCTCGAAGAGGCAGGCGAAAATGACGTCAATAACTTCTTCCAATTGACGGTGGAGATGTTTGACTACATGGAGTGTGAGCTGAATCTGTTTCTTGCTGTGTTCAGCTCACTGGACATGTCCCGGTCAGTGTCAGTGACAGCAGCAGGTCAGTGTCGCCTGGCTCCTCTGATCCAAGTCATTCTGGACAGCAGTCATCTGTACGACTACACAGTCAAACTGCTCTTCAAACTGCATTCTTGTCTTCCAGCAGAGACACTGCAGGGGCACAGAGATCGCTTCCTTGAGCAGTTTAAAAAGCTGAAGAGTCTGTTCTGCCGTTCCAGTAACCTGCAGTATTTTAAAAGGCTGATACAGATCCCACAGCTTCCTGAGTATCCACCAAACTTCCTGCGTGCTTCAGCTCTGTCGGAGCACATCAGTCCGGTGGTGGTGATCCCAGCCGAGACCTCGTCCCCAGAGAGTGAGCCCATGGTGGAGACCGACGAACTCGTCGACACAGACATCCCATCCCTGCCGAGTGTGGTGGAGAGTAGGTTCGATGACCTCTTTGGCACCTCAGCTACCACTGATCCCTTCAACTTCAACAGTCAGAATGGCATGCGCAAGGATGACAAAGACAGACTCATCGAGCAGTTGACCGCGGAGCTCCAGGCACTGAAAGAAGAGTTGGAGTCATTCAGACTGGAGAGTGGCCGTCTGTGCCAGGCCCTGCGGGGGCGTGTCAGTGAACTGGAGGCGGAGTTAGCCGAGCAGAGCCACCTCAAGCAGCAGGCACTGAGTGAGAGCGAGTTCCTGAAGGCAGAGCTGGATGACCTGCGCAGGGTCAAAGAGGACACGGAGAAGGAGCAGCGTAGCCTGACTGAGATTGAAAGAAAGGCCCAGGCGAATGAGCAGCGCTACACTAAGTTAAAGGAGAAGTACACTGAGCTGGTCCAGAACCATGCTGACCTGCTGAGGAAGaaTGCAGAAGTGACTCGGCAGATGACTGTGGCCCGTGCCGCCCAGGATGAGGTGGAGACTGTgaggagggagatggaggaACGACTGAAGGCAGCTCAGGAGGCAGTCAGCCAACAGgagAAAACCCAAGCAGAGCAGCTCCAAGTGCTTCAGGCTGACCTAGTTACCAGCAGAACAGAACTAGAAACCCTCAAAGCCAGCATGGCTTCCTCCCAGAAGTTAAGTGAGGAGCTCAGTGTGCAGCTGGCTGCTCTAGAGACTGCGAAGGCTGGGCTTGTGGAGACTGTGTCACAGAAGGATGCGGAGCTGGCAGGTCTGGGGGTGGAATTGGAGCGAGTGCAGAGCAGTCTAGCAAGCGAGAGGGAAAGTGGTGTAAAGGCTGCTGAAGCCCTACAGAATCAGCTCAATGAGAAGGAGAGTCGGGAACAGGCACTGGAGAGCGAGATTGTTTCTGTACGCTGGGCAGCTCTGAAGGCAGCACTGGAGGAGGCAGAGAGGGTTGTCCAGGACAGTCTGGCCCAGCTGGATGAGCCTGCACACATAAGCTGCACCAGCTCAGCCGATTACCTTATATCCAGGTGCCAGACTGCTTTAGAGTGTGTGGACAGACTTCAGTCAGCCAAGGACAGCTTTGTATCTGATAACATAAATATGTCCGAGCTGATGCGGGCCGTGGCTCAGCTGGCCCACCTGGTGGGTGATACCATTGTACAAGGCAGTGCCACTGCCCACATGGTGTCAGTGGACCAAGCCGACGCACTAACATCTTGTGTGAAGATATGTGGAACTGAGGCCCTGGCTCTGATAGCTCAGCTGAAGGAGCGGGACTCGCTGACTACAGCAGGCAGCAGTGGACTCAGAGCAGCTTTGGACAATGTGCTGGCCACGGCACAGAAGTTGCGGCCACGGGGTTTGGAGCTGCAGCAGGGAGAACTGGGAGATCTGGTGGAGCAGGAGATGGCAGCCACCTCAGCAGCTGTGGAGTCCGCTGTCTCCAGAATAGAGgaaatgcTGAACAAGTCCCGAGCAGTCGATTCTGGTGTCAAAATGGAAGTGAATGAAAGGATTCTGGCCTCCTGCACAGAGCTCATGCAGGCCATTAAAGTGCTGGTGCTGGCCTCTAAAGACCTGCAGCGTGACATTGTGGAAGGTGGCAGAGGTGCAGCAACTATAAAAGAGTTCTATGCTAAGAACTCCCGCTGGACTGAAGGTCTCATCTCAGCGTCCAAGGCTGTGGGCTGGGGAGCCACTATGATGGTtgaTGCAGCTGATCTGGTGGTCCAGGGACAAGGGAAATTTGAGGAGCTGATGGTGTGCTCACATGAGATAGCCGCTAGTACAGCTCAGCTCGTAGCTGCATCAAAGgTGAAAGCAGACAAGGACAGTCCCAACCTCGCTCGTCTGCAGCAGGCATCTAGAGGAGTCACTCAAGCAACTGCAGGCGTTGTGGCTTCAACCAAGTCTGGAAAATCCCAGATTGAGGAAACTGACACTATGGATTTCACCAGTATGACACTTACACAGATCAAGAGGAAAGAGATGGACTCCCAGGTGCGTGTGTTGGAGTTGGAGACACAGCTTCAGAAGGAACGTGAGCGTCTCGGTGAGCTGAGGAAGAAGCACTATGAGTTGGCTGGTGTGGCTGAAGGTTGgggtgaggaagaggaggGAACGGGATGAGGCGTTTCCCCACGCAGTAGCCCGGACTGGGCTTGTGCCTACTCTCTGGCACTCACTTGTTCCTCAGTGTCCCTCCCCCTTCTCTCTTCTTCACTCTCTTCAGACCTTTTATcctttaataatgaatgaaaagcCAAATAAAAAGGTGCTTTTAGTTTAACCCtgctcctcctcgtcctccctGTGGAGTAAGGACACTTACAGGAGGAGCAAAAGAGGAGACAATGTCACCTTAAGAGGAGGATGAAGCCTTAAAGGCAGCATGGAACGTATTTGGAGCACCCCCCAGTGGGCAGAGGGAAAACTGCACCGTTACTGACCTGTCAGCATTTTTTTGAGTTTCATTCCCGTCCActacctcctttttttttttttttttttctttcccccattCACAATTCCAAGACGACATGCGTCACACAAGGCGAGCAGGAATTACTGACACTGTGCCGTGAGCTTCCGGATCGGCCGCTTCCCaggcagcagcagtgtgtgactTCCACCACCTCTTCCAGAACTCATTCCTCACTTTGTGGACACACACGCCCCGTCAAACAAGCTGCTGAGTCTTCTCTGAAATGTCCCCTGCCAACCCTCCTCCCCACAGTGGCCTTGCTCTGGACTCTGAGCTGATAGTGAGTGTTCGGCCCACGAGAGAGGCTTCCCTCCGCACTAACACTAGCGACTGTCTGAAGACTGAACTAAACTCAGCTTCTCCCTCTCTTGCTTCCTCtgcgtgtatgtatgtgcagtgtttttatttttcacttggtAGTTCTTTTAACCATGCCTCCTGAGCAGTAGTTTTTCTCAAAAGTAGCCTGACTGggcttttaactgtttaatatgtttaatacaCAGGTCACATTTTGGTTAAGGGGAATGAATTATAATCCCATGTTTAATTGTGTACAAGTGATCTGTCAGGAATGACATCAGCCACAACGCATTTCATCTAATTTCATGTCCATGGCTGAAAACAAATTGACTGTTTTCATGACCCTCTGCTGCAAAAGGAGGATGTTTGACAAGAGTATCTAGGACACTGAGCTCTTTTCTTCTCAATAACTCTCTCCGTGAGTGACTGTTTTCCTCTGGTGCCCTTAGACAACATCAGTAGCGCCGCTGGTAGCCTCTATTTACACTCTTGTCAAGTGTTAATACCACCGGTGTGTATGTTGACTTCCACTTTGTACTTCCTTTTCCACGTCCAAACACAGGACATCAGCACATGTGAGGAGAGACATCTGTGCCTTCCAAAAGGTTAAAGTTCACATTCCTTCAATAAACCTTTAATGGCTGTAGCCTCGGACTGGTATTATAAAGGTTTGGAAAGCTGGTTTGGTGATGCCTTATGGAAATACTCTATGGTGTGTCTATGTTGGACGagttattgtattattgtattttaatgcatttggAGCTTCCAGCACAATTTCCTCCAACTGAGTGGTCCGGAGAGAGGACACTCAGAAAGGAGAGGGACAGAGTGAACGTTTAAAAAGGAGGCTTCTGATATAAAGATGTGCTAGCCCCCCCTTATTAAAGCAATCTAAACCAGATAGCCTTGTAGACCACCACTGTTTTATGAGCACAGCCTACAGTTGGGCCCAAAACAAACCTGGCTTCAATATTTACAAGTTTCATGTCCTTGCAGGCAGTCTTCAATTACCTCAGCTCCTTCATACAGCAAAGCAAGCAGACAAACATGGGTTCATTTGACATTAACAAATGTTCACATATGGCGCTGAGATGTGTGCATGTAACAGAAAGCTATTATTACTAATACCAGGTAtgaaatgactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggtgggtgtgtgagagagagtttttTGGTTGAGAAGGCCCAAAATGTGTTTCTATGTCTTTAACACCTTCACCCTGTCTTGTTGCActgcttttgctgtttttgtaaGTTGTAACACTGGGTATTTAATTGATCAGTTTGTCACCACCGCTCTGTTTTCATGTCTTATAGTCTTACCAGCCTTCCAACTGCCTCTCACTTTAGCCAGTCAGATAATATATGAATACTCAGTAACATTTTTGGACAATATCTTTGTATGATGTACTAAactgagtgtttttatttctttttttt

Function

GO:

id name namespace
GO:0001878 response to yeast biological_process
GO:0009790 embryo development biological_process
GO:0005543 phospholipid binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262227 lncRNA downstream 29500 6416882 ~ 6417625 (-) True G221461
TU262213 lncRNA downstream 30317 6326091 ~ 6416808 (-) True G221450
TU261982 lncRNA downstream 242195 6203064 ~ 6204930 (-) True G221245
TU261950 lncRNA downstream 354691 6091913 ~ 6092434 (-) True G221214
TU261757 lncRNA downstream 576498 5870401 ~ 5870627 (-) True G221068
TU262210 lncRNA upstream 25243 6513828 ~ 6514965 (-) True G221448
TU262299 lncRNA upstream 150458 6639043 ~ 6639829 (-) False LOC113532805
TU262406 lncRNA upstream 199004 6687589 ~ 6688311 (-) True G221618
TU262435 lncRNA upstream 270825 6759410 ~ 6759618 (-) True G221638
TU262426 lncRNA upstream 272071 6760656 ~ 6761787 (-) True G221633
XM_026924636.2 mRNA downstream 52818 6386179 ~ 6394307 (-) True zgc:103681
XM_026924831.2 mRNA downstream 64286 6305358 ~ 6382839 (-) True tyw1
XM_026924830.2 mRNA downstream 64289 6305358 ~ 6382836 (-) False tyw1
XM_026923942.2 mRNA downstream 148175 6233248 ~ 6298950 (-) False caln1
XM_026923943.2 mRNA downstream 156197 6233248 ~ 6290928 (-) False caln1
XM_026924502.2 mRNA upstream 22651 6511236 ~ 6513733 (-) True mos
XM_034310618.1 mRNA upstream 38887 6527472 ~ 6532884 (-) False mrpl28
XM_034310616.1 mRNA upstream 38887 6527472 ~ 6532848 (-) True mrpl28
XM_034310617.1 mRNA upstream 38887 6527472 ~ 6532841 (-) False mrpl28
XM_034310619.1 mRNA upstream 38887 6527472 ~ 6532785 (-) False mrpl28
TU261846 other downstream 422814 6021220 ~ 6024311 (-) False dynll2a
TU261738 other downstream 643247 5797985 ~ 5803878 (-) False LOC113532612
TU261666 other downstream 736234 5710098 ~ 5710891 (-) True G220990
TU260466 other downstream 2630338 3811560 ~ 3816787 (-) False LOC113544484
trnap-cgg_8 other upstream 706938 7195523 ~ 7195594 (-) True trnap-cgg_8
XR_004579456.1 other upstream 903830 7392415 ~ 7463499 (-) True zgc:77784
TU263800 other upstream 2452433 8941018 ~ 8946899 (-) True G222809
TU264952 other upstream 3819475 10308060 ~ 10312487 (-) False LOC113533081
XR_004579509.1 other upstream 6452325 12940910 ~ 13007559 (-) True nf1a

Expression Profile