RNA id: XM_026924180.2


Basic Information

Item Value
RNA id XM_026924180.2
length 7564
RNA type mRNA
GC content 0.44
exon number 19
gene id plekhg2
representative False

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 10357549 ~ 10400261 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTAAGCAGACAGATAACTGACATGAGAGCTGGCTTGTCACTACcggaaaaagaaatataataaattgtaatttgaGTACTTGGCTACTGCACCGTGGCTTAGCGCTCTACCGCTTGGGCTTTACAGATGGagcttttaaaaaagttttaaatgtttattgttaCTCTAGCAAGCTAATCAAATGTGATGATCATCATTAGCCTTCTCTGTATATAATCTGTGGCTCTGCACAGCGAGAATCAGCTGCTAAGCGGCCttcctctgtctcctctctgaGTGGGATCGTGAGCCGGATGGCCTCCTCTGGTGGCACCTCTCGTGGGAGCTGCACCTCCGTCAACACTGTTTGTTCTGACAGCGACCGGGGAGCGAGTCTcagctcctccacctcctccgcCTCACTGCAAGATGGCcactcatcctcctcctcatcttcacTGCCCTGTGGAGCTGTTCCAGCTTACCCATCACTACCCCAGCGCAATGGCTCTGACATCAGCCTGGACCTCACGCCATTGTCAGGCCCAGCCTCCCCCTCTTCCACCACCCTGCCGAAACTTTCACGCCTGCAGCGGGTGTTGCTGGAGATCGTTGAGACAGAGCAGGCATACGTGAGGGATCTAAAGAGCATAGTCGAGGACTATCTGGGGTGCATTATTGACTGTGGAGACCTTCCTCTTAAACCTGAGGAGGTCAGCACACTGTTCTGCAACATAGAGGACATCTATGAGTTCAACAGTGAGCTTTTGGAAGATCTGGAGCGTAGCCCTCATGCAGCAGCTATAGCCGAATGCTTTGTGGAGAGGAGTGAAGCCTTTGACATTTACACCATTTACTGCATGAACTATCCCAACTCAGTGGCCGTCCTCAGGGAATGCATGAAGAATGAAAGCCTGGTGCGTTTCTTCCAGGAGAGGCAGGCCACTCTCTGCCACTCACTGCCCTTAGAGGCCTACCTGCTAAAACCTGTGCAGAGGATCTTGAAGTACCACCTCTTGCTGCAGGAGCTGTCTAAGCACTTTGACAAGAATGATTCAGGATATGAGGTGGTGGAAGATGCCATCATCACCATGACAGCTGTGGCCTGGTACATTAATGACATGAAGCGGAAACAGGAACATGCAGTACGACTCCAGGAGATTGAGAGTCTGTTGCTAAACTGGACTGGTCCTGATCTCAGCGGCTTTGGAGAGCTGGTTCTGGAAGGTTCCTTTCGGGTTCAGAGGGTGAAAAAGGAGAGGGCCTTCTTCCTCTTTGATAAAATGCTGCTTATTGCAAAAAAGAGGATGGAGCATTTCATCTACAGCACACATATTTTTTGTTGTAACTTGCTCCTGGTGGAAAACATGAAGGATCCTCTCTGTTTCAAGGTGTCAGATCAGACAATTCCCAAACAACAGCACATTGTTCAGGCTAAAAACCAGGAAGAAAAGCGATTGTGGCTACACTACCTCAAGAGGCTAATAGTGGAAAACCATCCTGCATCTCTCCCCCAGAAAgcAAGACAGGTTCTTGGTGATAATTTCTGTCAGTCACCTCAGTTTGAACAAGAACCAAACAGAAAGCCCATCCCTTCTCCTCGATTAGACGATGCCCATGGCTTTCACAGAGGAAGAAGACAATCAGAACCCCCTGAATTTATCTACACCCCTGAGAAGGCCAGGAAATGCCTTCCATTGCTGCTGGAAGGGAACCTGCCATATCGCAGAGGGCGCCGACAGTCAGCTCCTGCCAAAGACATAGAAGCAGCCTTTCAACAAAGTGCCTCTTTAAAGGCTGGCAGTGAAGGTGAGCTCTACACACAGGTCGAGAGCTTGGCCTCCTCAGGCAGTGCCAGTACTCTTGCATCATCAGTCATTGAGGTTGGTTCAGCCCAGGATAAATTGGGTCTTGGTCCGGATGAAGAAGAGGACATGTCACCTCTCCCCACACCTCCAACGCTTTCCATCACTGAAGAAATCATGCAGTTTATCAATGAGAGCCGTGCACGAGAGGGCATGCCAGAGCTGTCTTCTGATGTGAGTGAGCCCAGGTCAGAGCCCTTGGACACCCAGTGCACTGAGCCACAGGACATAAGGGAATATCAGAAAACACATGTGGTAAATGAGGAAAATCAGCTGGATATTGTTTCCTGTAGCCCACAGGATAAGCAACCACTAATAGatattcaaataaacaaagaGGATGACATTGAACATTTTCCACATAATTTATTGCCTGATTCAACCTCTCCGAAAGATTTTGGGGaagatatttcattattatcatcCTCTCACATGCCCAGACATAACTATGAGAATGTGAGTGAATCACCGGAATCAGAGGTAGTCATGGCAAGACTCGTACCTGAGCAAATTATGGGGCAGGAAGTTGAGGACACTGCTGCCAAAGATACAATATCTGACctagaaaataaaatggaagAAATTGTCAGTGGAACCCCAGGTGAGCTGTGTGATAACTCCTCTTCTGCACTCAAACCTGCTGATAACCTTCTCCTGCCTAAAGGGGACGTTGAACAAAAGCTGACTAAAAGTCACAGGCAGATTATTGAAAAAATTCGCAGCTACTATGAGGCAGCAGAGGCAGTGGCCGAGGATGGACAAGTTTCACGCAGGAATAGTTTTTCTAACATCCCTGCTGGCCTGGTAAAAGACTCTGTGTCACGCTTTAATTTCTTTGTTCACCAAGTCAGTGTATGTGATTCTGAGAGTGGGCGCTCAGATTCCAATGAGAATGAAATTACGTCCACATCACCTACTGTACCTGACCAAAATGCAAAGATTTTCAACCAGCCTGACTATACCGGTGATGATGCTGTAGTTGCACATAATAGCCAAGGGCAAAGTAAGACTGAGTCAAAATCTGATGATGATCAGATTTGTGACTTTAAACCCTGTATGGAACTctggaaagagaaggagaggaaagCTTCAGGTCTTCAAGAGAGACTGAAAGCATCTGCCTGTAAGGAGGGTAGATTTGCTGAGGACAAAGAAGTATGTGCAAAAGATCCATTGTCTACAACTGATAGGAGGACTCCTGTACTCAGTGAACAAGTTGAACCTGAACAGGAGCACAATGAAAGCATAGAGCCCAAAAGCCCTGAGCAAACAGACAAAACTATCAAAGAAGCTCAGTCTACTGCTGTGCCCAGAGACAAGACTTACTATAACGGCAGTTTGGATGGTCTACCTAGTCAGATTAAAGTGGGACGGTGGTCTCGCCATGGTAAGGCGGTCACCTGCAGTAGGACACTTTACGAAGGCATTGCGGATGTGTCAAGTCTAGGATTCTTTGAAACTGCTCCAATGGATCAGTGTTTAGTAGAGAACTCAGAAAAAATTCTGAGTAAGGTACAGATGCTAGCACAAATGTATATGGCCAAGTCAAGCAGTATGAAGGTACCATTACATCAGAAAAGAACCCGGTTTACAAAGGGACCATGTAAAGCAAATACCCTTCCAAAGTCTGAGATACTGTTGCATCAGGCAGAAGTGAAGACACAGAATCAACTCTCAGATATTCACATGGAGTCTGTTACTCACTCTGCACCTGAGTCGTTTGGGCACGTGACTGTTAAAGAACAATTCACTACAACCTGTCACCAAGAAAATTATTGCAATATTACTGGACAAAAGGAGCAAGTCACTAGAATTGGAGCTAGTGCAACAGAAATCAATTCATTTGAAACATCGACTAGTTCATCTGAGTTATCATCTGAAATAATGGAAGAACATTTGGCCACAGATTTGGGAACTCAAAGGTCCTTAGAGAGCTCTACAGATCAAGAAATCCTTTCCAAAGAAAACCAAGTCATGTCACCTCTTCAAAGCTCTGGATCACAAGTCCAACACTTTCTTGAGCAGGATGCCAACCACACTTTGTGTTCAATTAGGGAGAACCattcaacagtaaataaaaatctgaccTTTGAGAGAGAAGATGAACATCAAAGTCAGTTATTGGTTGTGGGCCAACCAGTGATGGATTGTTATTCTAACTCTATAAATGAATCCGAAGAAGTTGTGAGTCTGAAGGAACAAGCCCATGGTGTTGAAGAGAAGAATGGTTTAATTAATAAGCCTTATGAAAGCCTGCAGTCTACTGAGGATACAGTGGGTGATACCCAATTGAGGGCATCAGTAAATTCTGGTTCCACTGATGATCCCATATCTTGCACTGAGAACTCCACTCCTAAAGTGGATGTGTCCCCTGTTAATATTACGGATACATCTCTTCCAATAGAATTGGCACTGTACTTGGAGAATGGTGTCTCAGAAACAACATCCAACAGAAATCCCCAAATGTCACCAGATGTGCTCAACTTTGATGTATCACATCACCCATGTTCTTCACAACTCCAATATCAATGTTCATCTGAAGCAAGCTGTACAAATGTACCACTTCTGCTTGGTTCCAGAGGAATGGTAAATCCAGAGTTTCTGGAAGGCAAAGAGGTACTAAACAATGATGTATTGGTGTTGGGCAATCCCCAAACATTGCCTCCCTGTAGACCTGCCATAGATAATCTTCCAAAATTCAACAGTCAAGGACTTGCCAATCAGCCTAGTACGATGGGAAGAAGCTTTTCTCCCTGGAACACATCAAACATGTCCTCCCAAAGACCATCACAGCCACAGCCCTGGTCCAGGCAACAAGACCAAGACACTTCATCAACTTCTGTGGTCTCATCCAGTAAACCATTATTATGTGATAATTCTTCAAGCATTCCCTCAAGTTTTCCTGACTCAAAGCCACCATCTGCCTTTAGCTTTAGTCTTCGGATGCGTTCACCCTCCCCTAATACAAGTTATTCAAACTCATCTACAAATTCCTCTGCTCTTGCCAAATCACTTGCTGCTTCTTGTATTAGTCAGACAATTTCTCAAAGCATGGCCAGAAGGAACGCTCGCATGCAGGCTGCCTCTCCCCCTGTCAGTTCCAGTTCACTGCATGCATCCACTCTAAGACTGAGGTCTCCCTCCCCCAAACCTGTCATCCTGAACTCATATGTACAGTCGGATCCTAGCAGTTTACCCACTAAGGTGACAGGTAGCCAAAAACATTCCCCTTCCTCTTCCTGCTCTAATAGCCTACGATCTAGCCCAGCAAATGTACAATCTCCTCCTCCTTATTGCAGCCAAAATTTAGTCTCTCCTGCTTCCCCTGTACATCTCTACTCATTACCCTCTGTTACTCATACAAGGGCTGATCATCTTGAACAGTCTCCTCATACTCCTCTGAAtagcaataacaacaacaataatggTCTTTGTAGTAATGCCTGGACAATTAATCATCAAAAGCCATCATCAACACCACAAATGTACAGAGCTCCTCATTCTCATGATCCAAATCGAGGGACCTCACACAACAGAATTGCTCGACCATTTCTGTCCTCAGAGCCTAACTCACGTGTGCAGTCTCCCTCTCACTCGCCGTCTCTGATCACACGTATCTGTTCCCCACCACTTGTCCAGAGTAGTGCTGGTCCATTAATAACCAAGCCTCCTAATCCACGGACCCCCAGACAGGGTGGGGCCAGTCCTTTCACACCTTTGTCTTTAGAGCTTTCTCAGACAACTTCATCTTGCTTTTTGTCTCCATGTGCAAGTCCCAGGGTAACCTCCCCACCTCCTATTGGTATTCCTACAAACATATGGTGCATTGTAAGCCCTCAGCCAAGGAATCCACTAGTGACACCTTCCTCCCCAACAAGAGCAGAGGCAAGTTCTATTTCAAGAGACTCAAGAATCACTTCACCAGTGTCCGGATCATCTCCATGTTCACTATTCTTCTCTCAGAACCAGAGAAGACCAAGAGGAAGCAGCTTGCCATTTGAGAACCTGACAGACAGCCGATCAAGTCCGTTCAGAAATGAGCATAGGTCCTTTGCTGAGAATGGACAATGGGCAGTGGATGCAGAGTCACACCCAACTAGTCCTCAAATGCGCTCCTGCAATGGTTCCCCTATGTGTGTTAGTCCAGGACCTAAGTCTCCTATTAGGGGGGCTGCTGAGAAGACCACTGATGCTGGAAAGCACCTAACAAACTTTAACTGGCCAGAAGTGCATGAACTGCCATCCATCTATAACAAAGAGGACAGTTCTCAGTGTAACCTTTTACCCTCATCGTCTTGTCCTGAAACTGGACAGGAGGACTCAGAACTGGGGAAGGCTACTTGCCGGAGTAGCCTTGTCTGTGCCTATGTAGCTCAAGCCACCCCTGACACTCATATTCAACACTCATATGATGGAAAACAAGTGGATAATGTGCCAATACAGGGGACTAAGACACCATTAAAAACCAGTTATGCCACAACTGTCAACCTACAGATTGCTGGGAGTGGGAGAATTGCATCCTTTAGTAATGCTCAGGTTAGTCTGACTCAAACTCTGGCACCAGTGACAGAGAGCCAGGGCATGAGAAGGGTCAGCATAAATGgctgcacactctcactgcagAACTGCAAAAGGCTCTAAGTGGAACTCATCTGAGGTATATTATAGTGTCTCCTGCTTTAACAACATTTACCAGGCACTCTACCATGTGTAAAAGGAGGCAGATAGAGATTCATGTCCATTTTACTGAGATGACAAATTACGGGTGTCaggaaatttgtttttattgctcGTTGCTAACTCTTTAGTTGCAAAGGGTGCTTCATATACAACTCAAGTTTGGATTACTGCCCAACCAGAAattctggtttgtttttttaagcagtgttattttattatttttatataattgtaaaatattcTAATTTCTACTTAACTTAACCAAAGCCTCTgttacaaaaagtttttttcttttgctgaaataggcagttttttatttatgaagtaGGGTTTTTATGGCACTTATctcttttctgtattttgcaCAATTTCCTATGTGGTCCAGACATATCTAAATGATTGTGTTTTTCATAGAGTAGTAAGAAAAGAAATTTGTATGTACAAATAAGGGAAGGTAGAAGAATGTTGCTGTTTTTCAATAAGGTTAATCAAACATGCCACTGCTATAATTGAAAAATTGATTCCATCATTCCAAATTCATAGTGAGTCCATTTATAGCCCCAATCCACCAGATCCTTTGAAAGCACCTTAGTAATATCTGTGGTAATGGTAAAGTGGACAATTTCTCGTGTTTTCTAGATTATCAGTTTAATGTTGCCAGTCTGCTTCTGTacatgagaaacaaaaaaattaaaaatattagtaaGAATCAGaacaaacatgttatttaaaaaagtataccATAATACAGTCCATCCTGCCTGCCCTTCCTGCAATAGgaataagcaaataaatttgCAGCATTTAATGATGTGTAGTTATAACTATGTATAGTTTTAactatatattgtataattctatactatactatgtaTTGTGATAACTATGTATAGTTATCAAAAGTATGACTGAGTTTGCAGAATTTGCAGCATTTCATAATGTATAGTTATTTCCAGTGTGACAGCTGTCAAACCATTTGAATACaccctataataataatttgttccctcattataaataaaaatctgtgtatgtttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264865 lncRNA downstream 194177 10161783 ~ 10163372 (-) True G223676
TU264564 lncRNA downstream 256383 10100959 ~ 10101166 (-) True G223449
TU264558 lncRNA downstream 267559 10089643 ~ 10089990 (-) True G223443
TU264545 lncRNA downstream 275432 10081581 ~ 10082117 (-) True G223437
TU264516 lncRNA downstream 318191 10038844 ~ 10039358 (-) True G223410
TU264978 lncRNA upstream 22705 10412456 ~ 10412680 (-) True G223766
TU265027 lncRNA upstream 170675 10560426 ~ 10611848 (-) True G223808
TU265054 lncRNA upstream 246405 10636156 ~ 10636794 (-) True G223827
TU265074 lncRNA upstream 318501 10708252 ~ 10712073 (-) False appbp2
TU265085 lncRNA upstream 366747 10756498 ~ 10761733 (-) True G223855
XM_034310511.1 mRNA downstream 817 10345590 ~ 10356732 (-) False il15l
XM_034310508.1 mRNA downstream 818 10345590 ~ 10356731 (-) True il15l
XM_034310510.1 mRNA downstream 819 10345590 ~ 10356730 (-) False il15l
XM_034310509.1 mRNA downstream 819 10345590 ~ 10356730 (-) False il15l
XM_034310568.1 mRNA downstream 14664 10326187 ~ 10342885 (-) False supt5h
XM_026924136.2 mRNA upstream 23541 10413292 ~ 10426287 (-) True spint2
XM_026924366.2 mRNA upstream 93400 10483151 ~ 10488560 (-) True si:dkey-182i3.11
XM_026924819.2 mRNA upstream 149818 10539569 ~ 10542916 (-) True ckmb
XM_026924376.2 mRNA upstream 170806 10560557 ~ 10570176 (-) True ercc2
XM_026923931.2 mRNA upstream 182884 10572635 ~ 10574319 (-) True zgc:154093
TU264952 other downstream 45062 10308060 ~ 10312487 (-) False LOC113533081
TU263800 other downstream 1410650 8941018 ~ 8946899 (-) True G222809
XR_004579456.1 other downstream 2894050 7392415 ~ 7463499 (-) True zgc:77784
trnap-cgg_8 other downstream 3161955 7195523 ~ 7195594 (-) True trnap-cgg_8
TU261846 other downstream 4333238 6021220 ~ 6024311 (-) False dynll2a
XR_004579509.1 other upstream 2551159 12940910 ~ 13007559 (-) True nf1a
XR_004579489.1 other upstream 2680385 13070136 ~ 13080860 (-) True wsb1
TU267049 other upstream 2978012 13367763 ~ 13368850 (-) True G225622
TU268481 other upstream 5422638 15812389 ~ 15844783 (-) True G226830
TU268676 other upstream 5729546 16119297 ~ 16165036 (-) False G226991

Expression Profile