RNA id: XM_026924191.2


Basic Information

Item Value
RNA id XM_026924191.2
length 6046
RNA type mRNA
GC content 0.48
exon number 26
gene id ulk2
representative False

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 10040742 ~ 10070727 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGGAAGAGTGGGTCAGTGTGGTGATGCTGGAGCGCGAGGGACATCAACAGCCTGATTAATGCCTTCTTTAGCTTATGTATTATTGTTCAGGAATAAGGAAAGGCGCTTGGTTAAAGATAGATAAGAATAATCTTATCTTGAGAGGACTGAGgaaactgaaaaggaaaaacacaccCGAGCTGAATAAACACCTAgccagttgtgtgtgtgtgtgtgtgtgtgtgtggatgttgagGAGCATCAGCGTTTTTCCGTTATTTCCTGGAACTGTGCAGAATTCGGATTATAATCGATGAAATCTGCATtgcatgttgttgttttgcGGATAGACCGTTCATTTATCCGCTCTTACACGGATATGCTCATGCACGCCTAGTCCATCGAGCATTATTAAAATTAGATTCAGTGTACTTGTTCACATGCTTTGCTTGGTTTGTTGATTTTGCCGTTTGGACGCTGTGTGAATGCTGCTATGGGTTTCAGCCTGAGCCTGAGCTCCAGCACTGACTCCCAGCTCTCCGGCACACGGCTTTTATCCGGAGACAAACTCCTCTGACACCATGTAGGTAGTCGTGTTTGACGACTGCTTCCAACGGAAACACAAAGCAGCGCTAGCTGAAGTGCTAACTGGGTCAGAAAATGACAGCTTAGGCCAGCCAGGGGAACTAGCTAGCTCCTTCAGCTCTCCATCTCTTATTACTGCAGCCTGCGCTTAGCTAACGCCTCGGAGCCCTCGGCTAGCTAGCTGTCAATATATCACATAagattagccagctagctagctgtataGCGCTATAGCTATGCTTTgaccttatatatatatgtatgtgtatatgtgtgtcgTTATTAATGCGAGCTCTTTTGGTATGGGTAAGCGGAATGCCCGTCAGGTTCAGGTGTTTAGCTAGTGTTTAAAGCTGTCCCTCGTCCATTGCTCTGTATTGTCCCCGGCTACACTGTGGACAGACATGGAGACGGTTGGAGACTTCGAGTACAGCCGAAAAGACCTGATAGGACACGGAGCCTTCGCGGTGGTCTTCAAGGGAAGACATAAAAAGAAGACAGATTGGGAGGTGGCCATCAAGAGCATTAACAAAAAGAACCTCTCCAAGTCTCAGATTCTGCTTGGGAAGGAGATCAAAATTTTGAAGGAACTGCAGCATGAGAACATCGTGGCACTCTATGATGTCCAGGAAACGcctaattttgtttttcttgtaatGGAGttttGTAATGGAGGAGATCTGGCAGACTATTTACAAGCTAAGGGCACTTTGCGGGAGGACACCCTGAGGGTCTTTCTCCAGCAGATAGCAGCAGCCATGCGTGTCCTCAACAGCAAGGGTATCATTCACCGAGACCTCAAACCCCAGAACATCCTCCTGTCCTACACTGGCCGCAAGAAATCCAGCGTCAGTGGCATCCGCATTAAAATTGCTGACTTTGGCTTCGCACGATATCTTCAAAGTAACATGATGGCAGCCACTCTGTGTGGTTCGCCTATGTACATGGCTCCAGAAGTAATAATGTCACAGAACTATGATGCCAAAGCAGACCTGTGGAGCATCGGGACTGTTATTTATCAGTGTCTTGTGGGGAAGCCACCCTTTCAGGCAAACAGCCCACAGGACCTGAGGATGTTCTATGAGAAAAACAAGACACTGGTGCCAAACATCCCGAGGGATACATCTCCTCCCCTTGCTGATCTGCTGCTGGGTTTACTACAGAGGAATCAGAAGGACCGGATGGATTTTGATACATTCTTCAGCCATCCCTTCCTGGATCAAACATCTAACATCAAAAAATCTTGCCCTGTGCCAGTGCCTGCATGCCCTAGCTCAGTGTCGGAGAGCACTTGCGGCAGCTCGCCCTCCTGCCGTTACGTCTCACCTCCGTCGTTGCCGGACATGCAGACTCTGCCCGAAGACGTGCTGTCCTCTCCACCTCTCGGCCCTCCCAACTACCTGCAGCTGTCTAAAGAGTCTGGTGGCAGCACCAGCAGTAAGAACTCCTCCTGCGATACAGACGACTTTGTGCTGGTGCCGCACCTCTCTGGAGAACAGTCCTATGACCTGCCGATGGGGGCCACTGGCCGTAGACCTTCCAGTGAGTTTCTGCTCTGTGGAGGGCAGCCGCAGCCCTCTTCAGGCCAGAACCCTGTGGTGTCCCCTCGAACAGAGACCACCCCGATCCCTGTGCCCACTCAGGTGCGCAACTACCAGCGGATCAAGCAGAACCTCTCCAGCAGCCCCAGCACCACCCTCTACGGCTCACCCAGGTCTGGTACAGTGAGGCGCTCCAACACAAGTCCTATGGGATTTCCAAAAGCTGCCTCTGGGTCCCCCAGCCCTGCTGATGCTGCCCAGACTGTGGGTCGAAGACTGTCCACTGGCAGCTCCCGTCCCTACTCGCCTTCTCCACTGGtgGCTACTATTCCTGAGCAGCTGGGCCATTGCTGTTGTGgacatccccacagccacgAGGCACGCAGCCGCAGCTCGTCTGGTGgtTCCCCTGTGCCCTCATCTCAATTGCTGGGTGCCCGTCTCCAGAGCGCACCCACCCTGACTGACGTCTACCAAAACAAGCAGAAGCTATACAAGCAGCTGTCTGATCCTGTGCAGCCTACTGCCTTAGCCTATCCCCCTACCCACTCACCACAGTTGGGACGCCCTGGCAACCTGGGGACCTCTCCCACCAAGCACCTTGGCTCCTCCCCCCGCACCTCTGATTGGCTACAGAAGTCCCCCCTACCCACCATCATTGGCTCACCAACCAAGACAACCGCTCCCTTTAAAATCCCTAAAACTCAGGCCTCGTGCAATCTCATGGCGTTGGCTTCTCAACAGGGCATAGTGGACAGCCCTAATTCCAGTAAGATGTCTACTGATGCCCGGGAGATCTGCCCCCACCACTGGTCACCGTACCCCAGCGGGCGACACTCGGCTTCCGAGAGCTCCAAAACTACCTTCGGCAGGTCTGTGAGTACAGGGCGTTTGTCAGAGCAGCCTGTGAGGATCACTCTGGGAGGACAGACGTACCAGGGCAGTACAGACAGCCTCAACACAGAGAGACCTATGGACACAGTGGGGTCCAACAGTTCAGCAGGCTCGCTGTACTCCACCAGTGGAAAGGTATGCATGGGTTCTCCTCCTGCTATGGCCATGGGTAGTTCTCCCCCCGGGGCAGAAGCGGCCCCCAGCAGCCTACGCTATGTCCCCTACGGCACCTCTCCACCCAGCCTTGATGGGTTTATCACTTTTGAGGCCCCTGAGCTCCCAGAGGAGACACTGATGGAGagagagcacacagacacactaatGCACCTGCGGATGATGCTGTCCTTTACGGACTGTGTGTTGGAGATGGCTGCTGTGAGAGCAGGAGGAGCAGACCTTGGCATTTCTGCAGCCTCGCTTTACCCTCCTCAGGACAGTGTGGTGGTGGACCAGATCAGCCAGCTCAGCAAGGAGTGgggGCAAGTGGAGCAGCTGGTGTTGTATATGAAGGCTGCTCAGCTGCTCGCGTCCTCTCTGCATCTGGCCAAAGCGCAGATCAAGTCTGCCAAGCTGAACCCCTCAACTGCTGTAAAACAAGTGGTGAAAAGCCTGAACGAGCGCTACAAGAGCTGCATCTCTCTGTGCCGCCAGCTCACGGACAAACTCAACCACTTCTTCTCAGACAAGCAGCGCTTTGTGGATGAGATCAACAGCGTGACTGCTGAGAAGCTCATATACAACCACGCTGTGGAGATGGTCCAGGCGGCAGCACTGGACGAGATGTTCCAGCAGACCGAGGACATCGCGTACCGCTATAACAAAGCCGCCATGCTGTTGGAGGGCCTTGCTAAGATCCTGCAGGATCCGGCAGATGTAGAGAACGTCACCAAGTataAGGCGAGTGTGGACCGGAGGATCTCTGCGTTGTGTTACTGCACTGTCACGCTGTATGAATAgatccctcacacacacaccactggcCACAGGGACCGTCCCCCTTCTAACCTGCTCAGACTAGAGGATCCCCTCACTCCCACTTCTCCGACTTCGTAGCAGCCAGAGCACTTTTcctttgtaattattattatttttcacaaaatcACCAGAACCAACAGAAcaagtattattttttcataaagGACCTCTTCCACCGAGTCACTACCAAAGATCAAATGCAACAACAATACAGTTTCTGTTCTCAAGAAAGAGGCACTGGACTCAGCAAGCTGTCTCCTGTTTCTTTCAGCAGTTCTCCTCAGAACACCTCTTTTagctttttcctctttttacaCTGAGgactggtcttttttttttaaaatgacttttttaaatactgtattcTGTGATAGTGTTGCGATTATTTATTGGTTATAGGAGGATATTAGTGTTGTCATGTTATGTTTGGATGCTTTTCTTGAGTCAGACTCATGTTGGACTGTAAttagcacacacacgcacacatttacTCGGCTGTCTTTAGCACGGTAGCCTGAGATTTGTaacataatcattttttttttttaaatcaaatgcaCTTTATTGACACAGACGTGGAAAAGACTTCTGCTAGAACCCACACTGAGCTATTCTCTATGGCTTGACTTGCTGCCTGGCTCAACAGGCTGtaaagagaaattaaaatgCTTGTCATGTGCAGGGACAAGAGTTTTCCCGGCGTTCCCGGCGTTCCTGGCTTTCTCGGCGATCAGGATCAGTCGTGATGTTCATCAACAATAATGGTCAAGATACTTGAGTAgttacttttcatttcatttgttaatatagaaacaagcattatgtttatattaatactggattttttttttgtttttataaactgACATTTgcattgtgtaaatatttgaatgtgCATGTGCGCTGTTTCGTGTTTTGTTCGTTTCGGAGCGAAAGGCAGTTGTAGGAGCTGTCATGGGATTCCCTGCCACTCAATCCAAGAGcacaagtcatttttttttagcagtttgATACTTACCCACTACTGCCATTCAGACTCTTATGCAGCCCTCAAGGAAGAGACCTCATGTTTGTCTTTGCATGGCAGCTCAGAATTCAGAAGACCTGTGCTCTATGAAGTACATTCCTTTTGGAGTGCAGTCGGATAAGGATACGAAGCAGAAATGCTAATGTGAACTCTCTCTGCCAGGCAGTAAGCAGCCAAGCTGGCTCTGCCTTTccctggctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgagtgtgtatatatgatcctgtatatataaatgtgtgtgtgtgtgtgtgttggcactGCTGAAGTGCACTAAAGGCCAGTTTAagaaaactgaactgaaagcaCTGCAAAAGTAGCCTGCTTTCTCCTGTACATGTGTTAATAACAACCTCCTGGTGTTATAGAGCTGCACTGGCACTGATGCTGTTTCCAGTTTGTTCTTTTTTGCTATCATTTTGTggtttatacattttattctcAGACTTTACCTTCACAAATCTATATTGTgtaggagggggaaaaaatgccaGAAAGATATTCTCCTGGCTCCTTTTataagaccctatcaaatccaTGCACAGTCCTGTAGCCTGTAGATGTCACTCCATTTTCAGGCTCTGAGCACCGTGTACACGGGATGTTTCTTCGAATTGACTGGTGCAGAGAGGAAGTCGCACCTGTGGAAAGTTAGAATGTATATTCCCTGTTCTTGAAGTAAATAACCACATCTGACTCGTCTCGTATAATACAGCCAATGCAATGGGAAACCTcaatggaaacttttttttttttttttttttttttttttaactgacacAATATTGTAATCAGTTCACCAACAACTCTGTTCTGTGTGGACTCAAAAATCCACTCAGGTTCACCAGAGCCACCTGCAGCACGGCTCTCTTTCCGCATTGTACCATGTTCATTGTTCATTTTGCATGGACATGAAATATAGATTTTATAACTTGGGACTTGTTACAGGACAACCAATAAGAACAGTAGTTCAGtccactatacaaataaaatcatttatatataatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264516 lncRNA downstream 1384 10038844 ~ 10039358 (-) True G223410
TU264514 lncRNA downstream 4760 10035742 ~ 10035982 (-) True G223408
TU264445 lncRNA downstream 62182 9931356 ~ 9978560 (-) True G223353
XR_004579459.1 lncRNA downstream 144981 9887016 ~ 9895761 (-) True LOC117599021
XR_004579476.1 lncRNA downstream 234233 9804673 ~ 9806509 (-) False LOC117599044
TU264545 lncRNA upstream 10854 10081581 ~ 10082117 (-) True G223437
TU264558 lncRNA upstream 18916 10089643 ~ 10089990 (-) True G223443
TU264564 lncRNA upstream 30232 10100959 ~ 10101166 (-) True G223449
TU264865 lncRNA upstream 91056 10161783 ~ 10163372 (-) True G223676
TU264978 lncRNA upstream 341729 10412456 ~ 10412680 (-) True G223766
XM_026924311.2 mRNA downstream 174411 9839316 ~ 9866331 (-) True LOC113532742
XM_034310470.1 mRNA downstream 205655 9823069 ~ 9835087 (-) True LOC113532826
XM_034310471.1 mRNA downstream 218055 9717745 ~ 9822687 (-) True LOC117599039
XM_034310466.1 mRNA downstream 336395 9677259 ~ 9704347 (-) False LOC113532707
XM_026923875.2 mRNA upstream 92680 10163407 ~ 10208971 (-) False sgsm2
XM_026923876.2 mRNA upstream 92680 10163407 ~ 10208971 (-) False sgsm2
XM_026923874.2 mRNA upstream 92680 10163407 ~ 10208971 (-) True sgsm2
XM_026923881.2 mRNA upstream 140859 10211586 ~ 10218371 (-) True tnfaip1
XM_026924926.2 mRNA upstream 237323 10308050 ~ 10312516 (-) True LOC113533081
TU263800 other downstream 1093843 8941018 ~ 8946899 (-) True G222809
XR_004579456.1 other downstream 2577243 7392415 ~ 7463499 (-) True zgc:77784
trnap-cgg_8 other downstream 2845148 7195523 ~ 7195594 (-) True trnap-cgg_8
TU261846 other downstream 4016431 6021220 ~ 6024311 (-) False dynll2a
TU261738 other downstream 4236864 5797985 ~ 5803878 (-) False LOC113532612
TU264952 other upstream 237333 10308060 ~ 10312487 (-) False LOC113533081
XR_004579509.1 other upstream 2870183 12940910 ~ 13007559 (-) True nf1a
XR_004579489.1 other upstream 2999409 13070136 ~ 13080860 (-) True wsb1
TU267049 other upstream 3297036 13367763 ~ 13368850 (-) True G225622
TU268481 other upstream 5741662 15812389 ~ 15844783 (-) True G226830

Expression Profile