RNA id: XM_026924268.2


Basic Information

Item Value
RNA id XM_026924268.2
length 2629
RNA type mRNA
GC content 0.42
exon number 7
gene id scn3b
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 8775146 ~ 8796028 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCGTAATCTTCCAGTTTTACTCCACAGTTCATATCAGGTCAAATTTCCATGTAAAGATCATGCATGGAGGTAAAATGGATGCCAGTCCACTTGTAGCAATTGACTAACATGTTTAGCCCACTACTCTCTCTACATTCTCCTCTGTCGGGGAACTGAGTCAGTCTGCTTGGAGTGTGAGACtgttgcgcatgcgcagttGAGATAAAAGAGACTCATGACCAGACTAATAGCGGGGAAAAACACAAAGCCAGGCGGTTcttccacagagagagagaaagagagagagagagagagagagagagagagagtagcgCGTCAGTGTGGCAGCGGATAATTTGTGGTACTCAAATGGATGGAAAGGGAGGTCCTTCGTCGCTCTTCCTGAAACGTTAGAGCTCTCTTTTTTCGAAGAGGAGCGATTTTTCTCTGAAGAATTATCTTTTAGCTAAGTCTTTCAGCTATGTTGCTTTGCTTATGAACATTACTACGATGAAAAACGTCGGCGGAAAAACGGAGCGTCAGTTCTAGAGAGTGGAGGGGCTTGTCTTCGAGGGTGTGGATGTAATGTGTATCTCTCGCGtgTCAACAGTGTGATGTTTGTTTCTTGGTGTGTTTGCTGGTGAACAGGGGACGCCGCCCTGCCATTAGCATCATGACAACTCAAACCAGGCTTCTGTGGCATTTTCTTTTGCTGCTCATATTTGTTGTGCGAGAATGCAGACCAGTGTGCGTGGACGCAATCTCAGACACAGAGGCAGTGCTGGGGAGCCGCATGAAGCTCACCTGCATCTCGTGTATGAAGAGAGAGGAAATCAGTGCTCAGACTAAGGTGTACTGGTATTACAAACCTGACCGGGATGCCGTCCGCCAGGAGATCTACCTATATGATGGCGAGCCGCAGGACCGGGAGGGGCCGTGGAAGGGCCGTCTGTTGTGGAATGGCAGCAAAGACCTGCAGGACGTCTCCATCAGCATTACCAACGTCACACTGAATGACAGCGGCCTGTACGAGTGTGTGGTGCACCGCCAATTTTCCTTCAACTCATACACCCCTTCCATTGAGAAGACCATTGAGATTGAACTGGTGGTGCGAGAGGAAGcaagTGAAGATCCCACAGCACTGTACTCAGAGATCATGATGTACGTTTTGCTGGTGTTTCTCACCTTCTGGCTGCTGGTTGAGATGATCTACTGCTACAGAAAGATCTCCAAATCAGACGAGCAAGTGCAGGACAGTGCGACAGACTACCTAGCCATACCctctgaaaataaagagaatcCGCCGGGTCCTGCGGTAACGGAATAAAAGTGGTTGTCTCACACACAATACGgtTCTGATGATTTCTTCTGGCATAAAAAGAGGCTGATCTTTGCAGGGACATTGCCAGCGTGCGAGTAGCACTGACATAACACGAAACCTGACAAAACAAATCCCTGTCGTCTTGCTCACATAATGAGAAGCAAATTCTCCACTGCTTAATTATcatccctgtctttctctcagtgAAGGTGACAATTACACTAGAGAGTAACACTAGAGAAAAACGAGGTCATGTTGGTGTTTTCACTACTTTTTGCCTTAGAGGAGATTCAACATTCTTAACagtaatcagaaataaaaagctagCACACTGcctatttacaaaaaaacatatttgcttGATGTTCAACATACTCAGAAAGCCTTTCATGTTATTTGATAGAGTCTTGTTCTTACCATTTTGATAGAACAAAATcgattttttgaaaatgtactcCAACATCTTTTAatccattctttaaaaaaaaaaggattgcaTTACATCCTAGCTTTCAGGGTTGCTTTAGACCAGGCTATTTTTTCTGTGTCAGGTTCAAAACTGAGTCTTTAAGAGTGTATGAGATAATCACTGTAGTCAGCTCAGCTCATATGATAGCTTACACATAACATTATGCTTTTGTGTGCGAATGAACCTACTTGTGTTTACACCCTACATGTGGATCATGCCTTTTAAAGAATCATCTTTCTGGTCATGAGATTTTGAAGTTGAGATTGTGAAGTATGTGACAAACTGCATAAGTCCCTTTAGAGCCTTTATATCAACAGTGGTAATGTTTACTGTAACCATGTTGAAGTCACTTTTAGTGATTATTGCTCAGTAACACACTGTAGTGACTCCGGAAACCTTTACTCTGTAATCACTACTAATCTTACAGTTACTGTGGACaagttgtgtgttgtattgtgtttCTCTCTAGATTAtgagcaagtttttttttttttttttttttttttttttctcgaatgtTTACAAGAGGACTCACGAACTATCCGCATAAACTATTAACAAACTCTCTATAAGTGAATACCAATCAGTGTGGCTGTGCGAGCATGACATAATTAGCTAGTGAATGCAACATTGGTTCCTATAAACTACTTTTACAATTAGGGCAATGTGAAAATGACTGTGTATCTGCACTTTATCCCCTCTGGAACTGTTGATAATGCCTTTTACTGtcttttatattaatacgctgtCAGTACAAGAGGACAAATGACATGTTTTCTTGCCCTGTCCAGGAAGAGCTGTATTTCTCTTGTGAAAGCTTGCCATCTATTATTAAAGCGAAGCTCTGTATTATGAAAGA

Function

GO: NA

KEGG:

id description
K04847 SCN3B; voltage-gated sodium channel type III beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263563 lncRNA downstream 226772 8544912 ~ 8548374 (-) True G222610
TU263542 lncRNA downstream 283862 8464576 ~ 8491284 (-) True G222591
TU263531 lncRNA downstream 368963 8404850 ~ 8406183 (-) False sorl1
TU263469 lncRNA downstream 532970 8241064 ~ 8242176 (-) True G222522
TU263325 lncRNA downstream 577939 8196805 ~ 8197207 (-) True G222391
TU263847 lncRNA upstream 250425 9037480 ~ 9043751 (-) True G222852
TU264411 lncRNA upstream 923379 9710434 ~ 9713059 (-) False LOC113532707
XR_004579474.1 lncRNA upstream 971103 9758158 ~ 9758966 (-) True LOC117599042
TU264417 lncRNA upstream 1015437 9802492 ~ 9806485 (-) True LOC117599044
TU264418 lncRNA upstream 1015889 9802944 ~ 9806485 (-) False LOC117599044
XM_034310395.1 mRNA downstream 2305 8729942 ~ 8772841 (-) False drd2a
XM_034310394.1 mRNA downstream 17365 8729942 ~ 8757781 (-) False drd2a
XM_034310393.1 mRNA downstream 26897 8729942 ~ 8748249 (-) True drd2a
XM_026924683.2 mRNA downstream 127908 8645643 ~ 8647238 (-) True zgc:162608
XM_026923992.2 mRNA downstream 144992 8615437 ~ 8630154 (-) False laynb
XM_034310866.1 mRNA upstream 12412 8799467 ~ 8814548 (-) True LOC113532830
XM_034310627.1 mRNA upstream 745995 9533050 ~ 9567354 (-) True mcamb
XM_026923911.2 mRNA upstream 745995 9533050 ~ 9567354 (-) False mcamb
XM_026923910.2 mRNA upstream 745995 9533050 ~ 9567317 (-) False mcamb
XM_026923912.2 mRNA upstream 745996 9533051 ~ 9567352 (-) False mcamb
XR_004579456.1 other downstream 1311647 7392415 ~ 7463499 (-) True zgc:77784
trnap-cgg_8 other downstream 1579552 7195523 ~ 7195594 (-) True trnap-cgg_8
TU261846 other downstream 2750835 6021220 ~ 6024311 (-) False dynll2a
TU261738 other downstream 2971268 5797985 ~ 5803878 (-) False LOC113532612
TU261666 other downstream 3064255 5710098 ~ 5710891 (-) True G220990
TU263800 other upstream 153963 8941018 ~ 8946899 (-) True G222809
TU264952 other upstream 1521005 10308060 ~ 10312487 (-) False LOC113533081
XR_004579509.1 other upstream 4153855 12940910 ~ 13007559 (-) True nf1a
XR_004579489.1 other upstream 4283081 13070136 ~ 13080860 (-) True wsb1
TU267049 other upstream 4580708 13367763 ~ 13368850 (-) True G225622

Expression Profile