RNA id: XM_026924289.2


Basic Information

Item Value
RNA id XM_026924289.2
length 5955
RNA type mRNA
GC content 0.52
exon number 24
gene id phldb1b
representative False

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 6959123 ~ 7039860 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGACACTTTAACTCAGGGGGTGTGGAAACACTCTCCCTCCTTCCACATCCCTCCTTCCTGTGACGAGGAAATGAGTTTGCTCCATTGCCGGAGTCAGCAGCTGTTCATCTCTTCCCACCTCTGTCTTTACACAATGCTGTAGACACACCAGCTTGACAGCTAAAACTGTACAGGCTTCTttaagcagcagcagcagcagcagcagcagctagcattattattagtagcagtagtattattATCACTGGATAACTTTAATCTTTTAAGACAGCTAAAGACTGCCATGCTGCAATCGCGAAACTCTTGAAGATTTGCCCTCGTTAGTGAAAGAGTTGGGGAGAATGATGAACCGCTAACAAAGGATTTGCTCAGGGCAAAGGAAAGCGGAATCACCGGCTTCTCTTCTCTCCTATCAGCAAAACGTGGCTTGTTTTTAAAGGGCCAGGCTGCACTGATTCCTGCACACTCCACACTGCAGATCATGGGGCTTTAGAAGCTGTATGCTGTGTTTTGGTCAGTCGTCCTTCTTCCGCTTCAACCACCCTGAGGAGGCATTCAGAATGAAGAGCATGAGGCCAGAAGGACAACATAGATCTGGCACCAGTAAAGACTTTGAGAGCCTGGTCAATGGGAACCACCAGTCAGGAGGACCTGAGTCTCGCCCATCCGGACACGAGAGAGTGCGCCCTGAGCACAGTGCAATTGTCAGTTCCATTGAAAAGGACCTTCAGGACATTATGGACTCCTTAGTCATGGATGATCCCCTGCCCTCTTCCTCCGCCTGTGAGACCAACAAGCCATCCGGTCCCCCTGCTGCTCAGTCCCCGCTGTCCCCCCTGTTAAATGGAGGTGGCCGCTATCTTCTCTCACCCCCCACGAGCCCTGGTGCTATGTCAGTGGGCTCCAGTTATGAAAATACCTCTCCGCCCTTCTCCCCTCTATCCTCACCCTCGGCTGCAAGTAGTGGGAGCTTCAACAGCCCCTCACCGAGTGGTTTCCAGGACCAgattccttctcttcctccagtACCGGTCAGGTCCTCCAGTTACAATTACACGAGTCAGCCTCCCATACCTCAGCCTCGGACTATGCTGCCTAACCCGAAGGTGCCTGAGAGCCCTCGGCTCCAGAGAAAGGCTCTACTGGAAGCTCCGCCGAGCCCTAAACCAGCCCGCAGGGGGCTGAGTCAGGATAGCCAAGTGGGGAAGTCTCCGGACACCTCTCGCCTACCCCCTATGTTGCCTTCAGTCTCAGTATCTTCAGTATCCAGTGATGCGCCATCTATCAGGCTAGCAGTACCAGCCAGCCCCAAACTGACTCCAAAATTCACCGCCACATCGTCTTCGTCCCCTCCTTGTAGTCCCAGGGTGAAAATGACTAGCGGTCTACAGGATCATCCACCCAGTCCGTTTCATGATCAGTCACAGCCAGATCGCTCACTCACTTCAAGCCCCTCTCagcttctctctcctcctcctcggGCATTCCAGCCCCCATTGGACCCAATTGTACACATAATCCAGGGTGGACAGCCACAGCCCCACTCACTTCAACCTCCGGAGAGTCCTCGGCTGGCCCGCAGGAATCTGGAGGCTGGCTGTGGCAGCAACGTGAGGGATCTGCCCCCTCTCAGCCCCTCCCTGGCACGTAGAGGAGTACCAGTACTGCCAGGCGCGCTTCCAGGTACCCTCCCAACCTGGTCCTCAGAGAGCCCAACTGCCAAGATAGTTCCAGAGAGTCCCAGACACAGACGCAAGGCTTCTTCCCCCTCTCAGGAGCTATACAGTCCCCGACTGGTGCGTGCCCGCAGCCCCTCACCCACCTCCGGGCTGACAGATGGTGGTGGACGCAAAGGGAGCTTCGGGAACACTCTATCTCCTGCCTTCAGCCTGGGCTCCCTGCCTGGGTCTTCGCCCTTAGCTAGTCCAAGGAACCACAGGAAGATGTCAGCAGGGCACAGAGACTTGCGGATCGGCCACCCAGGCATGAGAGAGCGCAAGAACAGCATCACAGAGATCAGTGACAATGAAGACGAGTTACTGGAATACCACCGGCGCCAGCGTGAGGAGCGCCTCAGGGAGCAGGAGATGGAAAGGCTGGAACGGCAGCGACTAGAGACCATCCTGAACCTCTGTGCTGAGTACAATAAGAACGATGGGCCGAGCGTGATGGGTGTCTCCAGGCCCACCGTGACACAGAGGCAGCGGGAGAGTGACGAGGAGAATCTGAGAGAGGAGTGTAGCAGCACAGAGAGCACACACCAGGACATGAGGACACCACACAACCTACAAAACGGAGACAACACACAGctggAGGAGATGTCAGGAAGTGGGACTAGGCTGGAACTGAGTTATCTGGAGGAGGAAAGGGTGCGAGTGCTGGCGAGGGTCGATGAGCTGAAGGCTCGGCTCACGGAGCTGGAACAGCAGCTACAGGAGAACAAACAGGAGgcggaGATGGAAAGGGCCTTGCTACAGGGTGAGAAACAGGCAGAGCTGAGCCAGATCGAGACTGAGactgacatcatcacacagCTGCAGCACAAAGTCAGCGAACTGGAGAGCGCCATCCAGAGGGAAAAGGACAAGGAGAGGGCGAATGTTGACAGCCAGCGGGAAGCCCTGGAGAGGCTTCAGGATGGCTACAATGAGCTGAAGAGCCAGCTGCATAACTGCCCTGAGTCTCTAAGGGAGCAGTTGCAGGAGCAACTCAAAAGGGAAGCAGAGACCCTGGAAGCTGAGACAAAGCAGTTTGAGGACCTGGAATTCCAGCAGTTGGAGAAGGAAAGCAGTCTGGAGGAAGAGCGTGAGACTATTTCCCAGCAGCTCCTGCAGGAGAAGGCGCAGTATCAAAGCAGTGTGGCTAAGAGAAAGGAAAAGGTTGCAGCGCTGGAGAAGCAGGCCAATCAGCTGGGCCTGCAGGCTGCACAGGAGTGTGAAAAGCTGGCTAAGGACAGGAGTGTCACCCTGCAGCTGCTTCAGAAGGAGAAGGAGAGGCTGGCTGGTCTGGAGAAGAGATACTTCAGCTTAACTGGAGGCAAGACTTTTCCTAAAGGCTCCAGCACATTAAAAGAGGGGTACTGCAGGATGGCGGATGTCTATAGGATGTATGTGAGTGATACCCAGCTGACCAACTCTGCTTCGCATGACCCCTCACTTACACTTGACCCGGCTGTAGCTGCCCCCTGCGAGGACTATGTTACTGTGGGCCAGTTAAACCAGATCTATGGGATGCCGAAGGTGGATTCCTCCCCCACCTCTCCTGCCCAATTGCGTCAGCCCACCCTTACCGAGCCTGCCTTTTCCTGTCTTCCTTCCCCCCATgactcctctctttctctctgttttgagGGTCAGCCGGAGCGGCTTAGGCCTCAAATCCCAAGGCTAGATTTAGAGCGCTGGTACCAGGAGGTGATGGCAGCTGGAGATCCCAGCCAGCTGTGCCCGCCTCCTCTCCCGGCTAAAGCTCACTCAGCACACAGGCCTCTGCAGGTGTACCGCTCCAGGCTAGACAGCGATGCCAGTCAATCCTCACAGAAGCCAAAAGTGAGTGCTGGACTTTCCCCCACCTACACCACTGCAACACTCGGCCGCAACACTTCCTCCAggAGTCCCATCATGGTTGCCAACAGCACCGGCAGTCTCCCCCGCAACCTTGCAGCCACTTTACAGGACATTGAGATGAAGAGACAGCTGGCGCTGCAACAGAAAGACTGCTTGCCATCGTCGCCTGAGTTCTCCACCATGGACAGTCCCACAGgtCAGCAGGTGATCGAGGAGCAGCGGCGGCGTCTAGCTGAGCTGAAGCAGAAGGCTGCAGCCGAGGCGCAGTGCCAGTGGGAGGCGCTGCATGGCTCCCACACACAGCTCAGCAGCTCTCCAGCTCCTCCGCTagtccatcactccatcctgcACCACACAGCACCCTCTGCTGGAGAGGACAACTACGACACACTCAGCCTGGAGAGCTCGGACAGCCTCGACACCAGTGTCTCCACCAGCAACAACTCTGCCTGCTCGCCAGATAACATGTCCAGTGCAAGCGGGATGGATGCGCTGAAAATCGAAGAGATGGAGAAGCTGCTGAAGGAGGCTCATCTGGAGAAGGCCAGACTCCTTGAGTCCAAAGAGCGAGAGAGCCAGGCACGTAAACAGCtgctggaggaggagaggaagaggagggaggaggcTGAGAAGAGGCTGCAGGAGGAGACGGTGCACCGGCAGCAGCTGATTGAGAAGGAGGTGAAGATGAGAGCGAGGAACTTCTCTCAGGCTCGGCCCATGACGCGCTACCTGCCCATCCGCAAAGAGGAGTTTGACCTGCGCTCACATGTTGAGTCATCAGGACACAACGTGGAGACCTGCTACCACATCATCCTCACAGAAAAGATGTGTAAGGGCTACCTGGTCAAGATGGGCGGAAAAATTAAATCGTGGAAGAAGCGCTGGTTCGTCTTCGATCGCCTTAAACGCACATTCTCCTACTATGCCGACAAGCATGAGACCAAGCTGAAAGGAGTTATCTATTTCCAGGCCATTGAGGAAGTTTACTACGACCATTTACGCAGCGCCACGAAGAAAGGATTTTTCAACCTGAACTTGACAAGTCACATCTCCGAACTGCTGCCTCCTCACTTTCgcagagagAGCCCCAACCCCTCCCTGACCTTCTGTGTAAAGACCCACGACAGACTGTACTACATGGTGGCTCCGTCTGCAGAGGCCATGAGGATATGGATGGACGTGATCGTAACAGGAGCAGAGGGCTACACGCAGTTCATGAACTAAAGTCGTCAGAGGACATAAAAATAAGGTCAAATGGTTGCGCCAGGGAAACTTCAAGTGACTCATCCTCCTGTTTACCGGCTCTATTGATTCCTAATGAGGAGGAaagccttttatttttattttgtatttcgTTCTTTTTAATAAGTTGTATATTCAGCTCAGCTGTACAGTTGTCAGACAGTCGTCAAAAGGTTTTCTACACCTGCCTGGATTTAAAAAGGGATTCCTACAagattaacaaaaacaaaaacagaaatggaggAGCAGTTGATTGTGTTAAATCAGCTTTGTTTTTAGGCAAACAGAGATCTCTCAGTGACATTTCAGTTCTTTTTAGTATGCATAACTTTTTTCACAACTGCTTAACagatgtatgtatttgtgtttgttgtgtttgggCTTTTTCATCTGTagaactttttccacatttaggATGTGGTATAGCCAAATGATGTCAAGCCATtctggactgtttttttttttttacaaatgatttgACCTACACACTATGAGAGTGGTTATGCATATACAGATCATACATGTAGAGATGATGTTAAAGCAAATATATCAGaattaatgaaatttttttttatgagaattTTTAGACAAACACCCAATATCACTGAAACAAGAACCTCAATCACCAAAGCTCATTAACAGCTCTCGTTCACCTGCATCCCACTGAATGTTTCTGTGTAGCCAGCAAAACATCACCTGTATGtcaacacatatacacacacacacacacacacacacactatataagaGAGTCTATTTGCCAAGTCCTGACTTCATCTTCAGCCTTCACTTCTTTAAGGAAGCAGCCATCTTCAGTACACTGCCACCTGAAGGCTCTCGGTGGACGAACAtcattaaacaacaaaacaacactaACCAACTTAACCTTCATATAATAATGCAAATCATTCAGTGCCTTGATATTTCTCCACATTTCATCACTGCAATACTGTTGTGAGAAACCTGCAGGACCACAAAACGCCAGAAATACAATCACTgtttacttaaaatgtatttttattctcaAGAGCTCTATTATTGTGACTATTCATAACAGTTGTTTGCACAAGTCATGCAGTCAGGATGATGGGAAAGTGATAAGTAAACACAACTAATTTatcagctcaaaaaaaaaaaaaagaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262485 lncRNA downstream 85764 6872831 ~ 6873359 (-) True G221683
TU262484 lncRNA downstream 87144 6871737 ~ 6871979 (-) True G221682
TU262483 lncRNA downstream 88849 6867784 ~ 6870274 (-) True G221681
TU262458 lncRNA downstream 152756 6806155 ~ 6806367 (-) True G221659
TU262426 lncRNA downstream 197336 6760656 ~ 6761787 (-) True G221633
TU262657 lncRNA upstream 107161 7122717 ~ 7124202 (-) True G221812
TU262663 lncRNA upstream 117961 7133517 ~ 7178296 (-) True G221814
TU262694 lncRNA upstream 203110 7218666 ~ 7220929 (-) True G221844
TU262771 lncRNA upstream 355814 7371370 ~ 7372320 (-) True G221902
XR_003403360.2 lncRNA upstream 560998 7576554 ~ 7577056 (-) True LOC113532601
XM_026924665.2 mRNA downstream 23054 6931522 ~ 6936069 (-) True atf5b
XM_026924666.2 mRNA downstream 23335 6931522 ~ 6935788 (-) False atf5b
XM_026924088.2 mRNA downstream 70132 6883128 ~ 6888991 (-) True LOC113532633
XM_026924556.2 mRNA downstream 118152 6831234 ~ 6840971 (-) True LOC113532877
XM_034310652.1 mRNA downstream 202857 6748916 ~ 6756266 (-) False tubd1
XM_026924337.2 mRNA upstream 148401 7163957 ~ 7172748 (-) False zgc:112083
XM_034310681.1 mRNA upstream 148401 7163957 ~ 7172603 (-) False zgc:112083
XM_026924335.2 mRNA upstream 148401 7163957 ~ 7172602 (-) False zgc:112083
XM_026924334.2 mRNA upstream 148401 7163957 ~ 7172360 (-) True zgc:112083
XM_026924333.2 mRNA upstream 148401 7163957 ~ 7172356 (-) False zgc:112083
TU261846 other downstream 934812 6021220 ~ 6024311 (-) False dynll2a
TU261738 other downstream 1155245 5797985 ~ 5803878 (-) False LOC113532612
TU261666 other downstream 1248232 5710098 ~ 5710891 (-) True G220990
TU260466 other downstream 3142336 3811560 ~ 3816787 (-) False LOC113544484
trnap-cgg_8 other upstream 179967 7195523 ~ 7195594 (-) True trnap-cgg_8
XR_004579456.1 other upstream 376859 7392415 ~ 7463499 (-) True zgc:77784
TU263800 other upstream 1925462 8941018 ~ 8946899 (-) True G222809
TU264952 other upstream 3292504 10308060 ~ 10312487 (-) False LOC113533081
XR_004579509.1 other upstream 5925354 12940910 ~ 13007559 (-) True nf1a

Expression Profile