Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00007938 |
| length | 771 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 2 |
| gene id | XLOC_004155 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 25782721 ~ 25829712 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0051216 | cartilage development | biological_process |
| GO:0000122 | negative regulation of transcription by RNA polymerase II | biological_process |
| GO:0030512 | negative regulation of transforming growth factor beta receptor signaling pathway | biological_process |
| GO:0030514 | negative regulation of BMP signaling pathway | biological_process |
| GO:0009953 | dorsal/ventral pattern formation | biological_process |
| GO:0001947 | heart looping | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005667 | transcription regulator complex | cellular_component |
| GO:0046332 | SMAD binding | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-990715-10 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and SMAD binding activity. Acts upstream of or within cartilage development; dorsal/ventral pattern formation; and heart looping. Located in nucleus. Is expressed in central nervous system. Used to study craniosynostosis. Orthologous to human SKI (SKI proto-oncogene). |
| ensembl_id | ENSDART00000159214 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00008798 | lncRNA | downstream | 337461 | 25475305 ~ 25476980 (-) | False | XLOC_004150 |
| TCONS_00007926 | lncRNA | downstream | 337461 | 25475305 ~ 25476980 (-) | False | XLOC_004150 |
| TCONS_00008797 | lncRNA | downstream | 337859 | 25475305 ~ 25476582 (-) | False | XLOC_004150 |
| TCONS_00007924 | lncRNA | downstream | 401288 | 25412343 ~ 25413153 (-) | True | XLOC_004148 |
| TCONS_00007921 | lncRNA | downstream | 405545 | 25368112 ~ 25408896 (-) | False | XLOC_004147 |
| TCONS_00008799 | lncRNA | upstream | 790428 | 26619434 ~ 26666495 (-) | False | XLOC_004162 |
| TCONS_00007965 | lncRNA | upstream | 1673199 | 27502205 ~ 27507973 (-) | False | XLOC_004167 |
| TCONS_00007962 | lncRNA | upstream | 1673503 | 27502509 ~ 27503132 (-) | False | XLOC_004167 |
| TCONS_00008800 | lncRNA | upstream | 1714572 | 27543578 ~ 27625465 (-) | False | XLOC_004169 |
| TCONS_00007969 | lncRNA | upstream | 1763637 | 27592643 ~ 27625125 (-) | False | XLOC_004169 |
| TCONS_00007935 | mRNA | downstream | 37123 | 25752198 ~ 25777318 (-) | False | XLOC_004154 |
| TCONS_00007936 | mRNA | downstream | 38994 | 25755436 ~ 25775447 (-) | True | XLOC_004154 |
| TCONS_00007933 | mRNA | downstream | 80024 | 25714095 ~ 25734417 (-) | False | XLOC_004153 |
| TCONS_00007932 | mRNA | downstream | 80531 | 25712772 ~ 25733910 (-) | False | XLOC_004153 |
| TCONS_00007934 | mRNA | downstream | 84025 | 25722005 ~ 25730416 (-) | True | XLOC_004153 |
| TCONS_00007939 | mRNA | upstream | 4213 | 25833219 ~ 25853212 (-) | True | XLOC_004156 |
| TCONS_00007941 | mRNA | upstream | 53611 | 25882617 ~ 26040594 (-) | False | XLOC_004157 |
| TCONS_00007942 | mRNA | upstream | 53611 | 25882617 ~ 26180714 (-) | False | XLOC_004157 |
| TCONS_00007944 | mRNA | upstream | 360697 | 26189703 ~ 26217510 (-) | False | XLOC_004158 |
| TCONS_00007945 | mRNA | upstream | 362285 | 26191291 ~ 26207138 (-) | True | XLOC_004158 |
| TCONS_00007931 | other | downstream | 144486 | 25669839 ~ 25669955 (-) | True | XLOC_004152 |
| TCONS_00007928 | other | downstream | 281961 | 25528557 ~ 25532480 (-) | False | XLOC_004151 |
| TCONS_00007927 | other | downstream | 338256 | 25476099 ~ 25476185 (-) | True | XLOC_004150 |
| TCONS_00007916 | other | downstream | 609198 | 25205153 ~ 25205243 (-) | True | XLOC_004144 |
| TCONS_00007913 | other | downstream | 846554 | 24967771 ~ 24967887 (-) | True | XLOC_004142 |
| TCONS_00007940 | other | upstream | 28935 | 25857941 ~ 25931082 (-) | False | XLOC_004157 |
| TCONS_00007943 | other | upstream | 191093 | 26020099 ~ 26180714 (-) | True | XLOC_004157 |
| TCONS_00007948 | other | upstream | 404721 | 26233727 ~ 26237953 (-) | True | XLOC_004159 |
| TCONS_00007950 | other | upstream | 544992 | 26373998 ~ 26375518 (-) | True | XLOC_004160 |
| TCONS_00007954 | other | upstream | 740525 | 26569531 ~ 26577209 (-) | True | XLOC_004161 |
