RNA id: XM_026924333.2


Basic Information

Item Value
RNA id XM_026924333.2
length 2268
RNA type mRNA
GC content 0.45
exon number 10
gene id zgc:112083
representative False

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 7163957 ~ 7172748 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGAACTTAAGAAGAACCAACAGTTCCGGTCAGTGAACTAAAAAAACACTGGCGTATTTAATTATCTCACAGAGAGAATGTTGTTATAACCAGAGCTGTAACATGTCAGTGTGGtgaatagaaatataaaaatgtttgactTGTTATTAGCTGTTATAATGCAGTGAACAAATCTCCAGCTCCCTCACTGCTGGCTAGCAGGCTAAGTTAGCTCAGTTAGCTCAGTTCTGGATGTAGAcaatccggatgtagatttcTCTTTAAGCAAGGAGacttgaggaagaaaccttgagaggtcAAAAGGGAACTTATCCTCTTCTGGCTGACACGAGAtgGGGATCATGGcgaaaaaaagaaatctctcCAACATGGTGATTACATGCGAATGGGCCTCGTGTACTTTTAAGGGAAGGAGTATGGAGGAGCTGAGTGATCACATGTCTTTACATTTGAAGGAGCATCTTGGGGACGGGGACACCATGGAGGAGCTTGATGATTATCAGTGTCTGTGGCAGGGCTGCGAGTTCCTGGCTATGGGAAGTCCTAATGAgctcattgcacatgcgcactTCCATAACTTCCACAGCAAACTGAAGTTCATCGGGACTCAGTTGCTCCAGTCCCATCCTGAGCTTCCCAGCTGCACTCAGGATCTGCACAGCAACAACCTGGTCACAGACATCTCTGAAGGATTCGTGTGTCAGTGGGAACACTGTGATAGTTCTTTTAACAATCCGGAGTGGTTTTACCGCCATGTGGACATGCATGCACACTGCACGGAGTTACAGCCGCTCCCTGATCAACAGCAGGCTCTCTTCTGCAGCTGGAAAGGCTGTGATGCCTTCTTTAAGATCAAGTATCGGCTGCGTGAGCATCTGCGCAGTCACACTCAGGAGCGTCTGGTGGCCTGTCCTACCTGCGGCTGCATGTTCTCCAGCAACACTAAGTTCTTTGatcacattcagagacaggccGAGCCAGAGGATTCTCTTACATGTGCCCATTGTGACAAAGGCTTCGCTAACGAGAGACTGCTGAGAGACCACGTTCGGCAGCACGTGAATCACATAAAGTGCCCACTCTGTGACATGACGTGCACATCCCTCTCCACCCTGAAGATCCACATCAAATTCCGCCACTGTGACGAGCGCCCATTCCCCTGTGACTTCTGCGAGAGCAGCTTCAAGAATCAGCATGATCTGCGGAAGCACATGGAGACCCACAACGAAGGAGCAGCTTACCGCTGCACAGTGGAGGGCTGCGGTTACTCTTCTCGCATGGCTCACACCATGAAACAACACTATAAAAGAGTACATGAGCAGGGGAACATGGTGTCTAGGTATAAATGTCATCTGTGTGACAAGAACTTTTCATGGTGTTACACCCTGACCCTTCACCTTAGAAAGAAACATCAGCTCAAATGGCCATCAGGACATTCCCGCTTCAGGTATAAAGAAGATGAGGACGGCTACCTGCGCCTGAACATGGTTCGCTTTGAGACTGTTGAGGTGACAGAAGAGCTGATAAAGAACATGGCAGAAAAACGCACCCCTCGCAAGCTCTCCGGCTCGAGTGCTCAGACTAAGAGACCAGCGCTACAAGCAGAGAGTATGAATGACGTTCCCACACCGTCTCCCTAcccctcctcttcatcctcctcctcctcctcttctatGACAGTGCTTGTGAATGATGACAATGGTGCATTAAAGGACAGAGCACCAGTGTACTGTATACTGAGCACAGTGACCGAGATGAACGGGGATCAAGAGAACACAGCAGACTCAGGGGTGGAGTCAGGGGCAGTGAGAGCTCTGGCTGCTGTAGCTCGAGGGCTGGGTATGGATGTAGTGTGAGGAGAAATTACATACGCAAAACACTGCAAACCACCATTACTGTTATACTGCATCTGATTTACACAAGCAAAGCAAAAAATCTGGATTTTTGTTAGCAGGTTATCAAATTTAGGGTAAAATATTCCTCTTTAAATGCTCTTtgttaaatttgattttataatGATATTTCGGCTTGGAAAtgataaatctgattttataataattcatgTTTCAGCTTGGAAATAATCTCTGGTTCTAAATACTGATTGTAAATTTTCCTCTTTACATCAATCTgcattttaagtcattttgcAGTTGTTTTAGCTGATACATTGTTTTTACAGGTTTTACATAGTGTTTATTATACTTGTAaacaaatgtttctgttttagaGAAATTGAATATGTAGTCAGTTTACATTTGCTGACAACac

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262657 lncRNA downstream 39755 7122717 ~ 7124202 (-) True G221812
TU262485 lncRNA downstream 290598 6872831 ~ 6873359 (-) True G221683
TU262484 lncRNA downstream 291978 6871737 ~ 6871979 (-) True G221682
TU262483 lncRNA downstream 293683 6867784 ~ 6870274 (-) True G221681
TU262458 lncRNA downstream 357590 6806155 ~ 6806367 (-) True G221659
TU262694 lncRNA upstream 46310 7218666 ~ 7220929 (-) True G221844
TU262771 lncRNA upstream 199014 7371370 ~ 7372320 (-) True G221902
XR_003403360.2 lncRNA upstream 404198 7576554 ~ 7577056 (-) True LOC113532601
TU263284 lncRNA upstream 960007 8132363 ~ 8132704 (-) True G222367
TU263294 lncRNA upstream 990277 8162633 ~ 8162848 (-) True G222377
XM_034310606.1 mRNA downstream 124097 6959123 ~ 7039860 (-) False phldb1b
XM_034310369.1 mRNA upstream 1996 7174352 ~ 7186264 (-) False map6b
XM_026923918.2 mRNA upstream 4211 7176567 ~ 7186260 (-) True map6b
XM_026923919.2 mRNA upstream 5631 7177987 ~ 7186263 (-) False map6b
XM_034310372.1 mRNA upstream 5641 7177997 ~ 7186262 (-) False map6b
XM_034310371.1 mRNA upstream 5657 7178013 ~ 7186263 (-) False map6b
TU261846 other downstream 1139646 6021220 ~ 6024311 (-) False dynll2a
TU261738 other downstream 1360079 5797985 ~ 5803878 (-) False LOC113532612
TU261666 other downstream 1453066 5710098 ~ 5710891 (-) True G220990
TU260466 other downstream 3347170 3811560 ~ 3816787 (-) False LOC113544484
trnap-cgg_8 other upstream 23167 7195523 ~ 7195594 (-) True trnap-cgg_8
XR_004579456.1 other upstream 220059 7392415 ~ 7463499 (-) True zgc:77784
TU263800 other upstream 1768662 8941018 ~ 8946899 (-) True G222809
TU264952 other upstream 3135704 10308060 ~ 10312487 (-) False LOC113533081
XR_004579509.1 other upstream 5768554 12940910 ~ 13007559 (-) True nf1a

Expression Profile