RNA id: XM_026924352.2


Basic Information

Item Value
RNA id XM_026924352.2
length 1899
RNA type mRNA
GC content 0.47
exon number 8
gene id tubd1
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 6748916 ~ 6756266 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTGAACGCAGCATGATTCACCTCCCTGACCGgcataaagcggttactgaaggaggcatgaatgatgaatgaattcaCTGTAACGAACAGTTCAGATGTTTCCATGGAAGCAGTGTGATTAAATTACACTGCGAGAGTAACGCCATTGTTTACCAAACCtaccaaaaaaagagaaaagaaagaatgaaacgACTCCTATACGCGACTTTCCTCTGAGCGTTCACACACAGGAACCGACTCAGTGAACCGAGTCATTCGCGACGACACATCACTAGCTGCACGCTAGTGAGCCGAGTCTGCTGTTTCACAGCATGGCCGGTCAGGTGAGGCTGCTGTGCTTGGAAGTTTGTAGGTAAGCAGTAGCTAGTTTGCTCTAGTAAGTAAGGAGGTAGTTATCTAGGTCCTGACATGTCGGTTGTGACAGTGCAGTTAGGTCAGTGCGGTAACCAGATAGGACCGGAAGTGTTTAGTGCTGTGTATGAAGACTCCACTGGAGCAAatgcacaaacatacaaacagtgCAGCGATGAGAGATTCTTCAGAGAGAATTCACACGGAGTGCTGGTGGCACGTGCAGTTCTTATTGACATGGAGCCCAAAGTAATTACTCATGCCATAGCAAAGGCGTCAGGCTCCGGAAAATGGAGATATGGGGGAAAATCCCACTTCTGCCAGAAACAAGGCTCTGGAAACAACTGGGCAAACGGTTACTGTGTTCACGGCCCTCAGCATAAGGACGCAGTGGAAGATCTGGTGAGGCGGGAGGTAGAACGCTGTGATCGCCTTGCAGGAATATTTGCCATGATGAGTGTGGCAGGGGGTACGGGTTCTGGCGTGGGCACCTATGTCACCCAGTGTCTGCGAGACACTTAtccacattcatttattcttaaTCACCTGACATGGCCCTATGGAACAGGAGAGGTTATCGTGCAAAACTACAATTCGGTTCTCACTCTGTCTCGTCTCTACACGCTGTCTGACGCACTCGTGGTGCACGAGAATGACACGGTTCACAAAATCTGCAGCCAGCTGATGAACATCAAGCACATCTCTATCTCTGACGTTAACAAGGTGATCGCTCATCAACTGGGCAGCGTGCTGCAGCCTGCATACACCGCTGACTCGCCTGCTCACTACAGCCGAAACCCCATAGGTGAATTGCTGAGCTCCCTGGTGTGTCATCCCGAATACAAACTGCTCAACGTGTTGAACATTCCTCACATGTCTCAGACATCTCTGGCCTACAGTGCCTACACCTGGCCCGGACTGCTCAAGCATTTAAGACAAATGCTCATTGCCAATGCCAGAATGGAGGAAGGTATTgattggaaagtgtgtgtgccgTCGAACAGAGCAGAGAGCATAAGAAACACACAAATGGGTTTTAACAGATCACTCTCTAATCTTCTAATACTGCGGGGTAAAGACGTTTCCTCTGCCGATATAGGGGCGTTTAAGGAGCCTGGACTCTACGTGCCATGGGTTCCAGCAGATGGCACTTTCCACATGTGGCACTCCCCCGTGCCCTTCAGTGGCTATGAGAAGTTGGCCACTTTAGTCAGCAACAGCCAGTCCCTTTTGAATCCTCTGGATAATATTGTTAAGAAGGCCTGGAACATGTTTGCATCACGGGCCTATATTCATCAATATACCAAATTTGGAATTTCAGAAGAAGATTTTCTCGAAAGCTTTACCATGTTGGAACAGATTATCTCCAGCTACACTCACCTTTGAACCTACCTCActattttaaatgacattttgaaatttttttttttaactaattacTGCATGCTAACTATCTAAAGTGAAAGtgtctgtgtgattgtgtgtgtctttgctgTATTTTCTACAAGCTGTGTATAGTATTAAATTGATATACATGTTCAACGTCAA

Function

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K10390 TUBD; tubulin delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262406 lncRNA downstream 60605 6687589 ~ 6688311 (-) True G221618
TU262299 lncRNA downstream 109087 6639043 ~ 6639829 (-) False LOC113532805
TU262210 lncRNA downstream 233951 6513828 ~ 6514965 (-) True G221448
TU262227 lncRNA downstream 331291 6416882 ~ 6417625 (-) True G221461
TU262213 lncRNA downstream 332108 6326091 ~ 6416808 (-) True G221450
TU262435 lncRNA upstream 4034 6759410 ~ 6759618 (-) True G221638
TU262426 lncRNA upstream 5280 6760656 ~ 6761787 (-) True G221633
TU262458 lncRNA upstream 50779 6806155 ~ 6806367 (-) True G221659
TU262483 lncRNA upstream 112408 6867784 ~ 6870274 (-) True G221681
TU262484 lncRNA upstream 116361 6871737 ~ 6871979 (-) True G221682
XM_034310811.1 mRNA downstream 95498 6620567 ~ 6653418 (-) False LOC113532805
XM_034310810.1 mRNA downstream 109087 6620567 ~ 6639829 (-) False LOC113532805
XM_034310809.1 mRNA downstream 109087 6620567 ~ 6639829 (-) False LOC113532805
XM_034310808.1 mRNA downstream 112626 6620567 ~ 6636290 (-) False LOC113532805
XM_026924450.2 mRNA downstream 112628 6619172 ~ 6636288 (-) True LOC113532805
XM_026924556.2 mRNA upstream 75858 6831234 ~ 6840971 (-) True LOC113532877
XM_026924088.2 mRNA upstream 127752 6883128 ~ 6888991 (-) True LOC113532633
XM_026924665.2 mRNA upstream 176146 6931522 ~ 6936069 (-) True atf5b
XM_026924666.2 mRNA upstream 176146 6931522 ~ 6935788 (-) False atf5b
XM_034310612.1 mRNA upstream 203747 6959123 ~ 7039860 (-) False phldb1b
TU261846 other downstream 724605 6021220 ~ 6024311 (-) False dynll2a
TU261738 other downstream 945038 5797985 ~ 5803878 (-) False LOC113532612
TU261666 other downstream 1038025 5710098 ~ 5710891 (-) True G220990
TU260466 other downstream 2932129 3811560 ~ 3816787 (-) False LOC113544484
trnap-cgg_8 other upstream 440147 7195523 ~ 7195594 (-) True trnap-cgg_8
XR_004579456.1 other upstream 637039 7392415 ~ 7463499 (-) True zgc:77784
TU263800 other upstream 2185642 8941018 ~ 8946899 (-) True G222809
TU264952 other upstream 3552684 10308060 ~ 10312487 (-) False LOC113533081
XR_004579509.1 other upstream 6185534 12940910 ~ 13007559 (-) True nf1a

Expression Profile