Item | Value |
---|---|
RNA id | XM_034310652.1 |
length | 1459 |
RNA type | mRNA |
GC content | 0.47 |
exon number | 8 |
gene id | tubd1 |
representative | False |
Item | Value |
---|---|
chromosome id | NC_047608.1 |
NCBI id | CM018554.1 |
chromosome length | 25848897 |
location | 6748916 ~ 6756266 (-) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
species | striped catfish (Pangasianodon hypophthalmus) |
id | name | namespace |
---|---|---|
GO:0007017 | microtubule-based process | biological_process |
GO:0051258 | protein polymerization | biological_process |
GO:0006184 | obsolete GTP catabolic process | biological_process |
GO:0005874 | microtubule | cellular_component |
GO:0003924 | GTPase activity | molecular_function |
GO:0005525 | GTP binding | molecular_function |
GO:0005200 | structural constituent of cytoskeleton | molecular_function |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU262406 | lncRNA | downstream | 60605 | 6687589 ~ 6688311 (-) | True | G221618 |
TU262299 | lncRNA | downstream | 109087 | 6639043 ~ 6639829 (-) | False | LOC113532805 |
TU262210 | lncRNA | downstream | 233951 | 6513828 ~ 6514965 (-) | True | G221448 |
TU262227 | lncRNA | downstream | 331291 | 6416882 ~ 6417625 (-) | True | G221461 |
TU262213 | lncRNA | downstream | 332108 | 6326091 ~ 6416808 (-) | True | G221450 |
TU262435 | lncRNA | upstream | 3144 | 6759410 ~ 6759618 (-) | True | G221638 |
TU262426 | lncRNA | upstream | 4390 | 6760656 ~ 6761787 (-) | True | G221633 |
TU262458 | lncRNA | upstream | 49889 | 6806155 ~ 6806367 (-) | True | G221659 |
TU262483 | lncRNA | upstream | 111518 | 6867784 ~ 6870274 (-) | True | G221681 |
TU262484 | lncRNA | upstream | 115471 | 6871737 ~ 6871979 (-) | True | G221682 |
XM_034310811.1 | mRNA | downstream | 95498 | 6620567 ~ 6653418 (-) | False | LOC113532805 |
XM_034310810.1 | mRNA | downstream | 109087 | 6620567 ~ 6639829 (-) | False | LOC113532805 |
XM_034310809.1 | mRNA | downstream | 109087 | 6620567 ~ 6639829 (-) | False | LOC113532805 |
XM_034310808.1 | mRNA | downstream | 112626 | 6620567 ~ 6636290 (-) | False | LOC113532805 |
XM_026924450.2 | mRNA | downstream | 112628 | 6619172 ~ 6636288 (-) | True | LOC113532805 |
XM_026924556.2 | mRNA | upstream | 74968 | 6831234 ~ 6840971 (-) | True | LOC113532877 |
XM_026924088.2 | mRNA | upstream | 126862 | 6883128 ~ 6888991 (-) | True | LOC113532633 |
XM_026924665.2 | mRNA | upstream | 175256 | 6931522 ~ 6936069 (-) | True | atf5b |
XM_026924666.2 | mRNA | upstream | 175256 | 6931522 ~ 6935788 (-) | False | atf5b |
XM_034310612.1 | mRNA | upstream | 202857 | 6959123 ~ 7039860 (-) | False | phldb1b |
TU261846 | other | downstream | 724605 | 6021220 ~ 6024311 (-) | False | dynll2a |
TU261738 | other | downstream | 945038 | 5797985 ~ 5803878 (-) | False | LOC113532612 |
TU261666 | other | downstream | 1038025 | 5710098 ~ 5710891 (-) | True | G220990 |
TU260466 | other | downstream | 2932129 | 3811560 ~ 3816787 (-) | False | LOC113544484 |
trnap-cgg_8 | other | upstream | 439257 | 7195523 ~ 7195594 (-) | True | trnap-cgg_8 |
XR_004579456.1 | other | upstream | 636149 | 7392415 ~ 7463499 (-) | True | zgc:77784 |
TU263800 | other | upstream | 2184752 | 8941018 ~ 8946899 (-) | True | G222809 |
TU264952 | other | upstream | 3551794 | 10308060 ~ 10312487 (-) | False | LOC113533081 |
XR_004579509.1 | other | upstream | 6184644 | 12940910 ~ 13007559 (-) | True | nf1a |