RNA id: TCONS_00007939



Basic Information


Item Value
RNA id TCONS_00007939
length 1381
RNA type mRNA
GC content 0.50
exon number 3
gene id XLOC_004156
representative True

Chromosome Information


Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 25833219 ~ 25853212 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CTGCTTAACTCTTTTCAACTGAGTGCTGCAGTCGAGTTGATTTTGAACAAAGTTCCTGTGTCGGTTAAAAGACCACAAATAGTAGATGAAGAGTGAGTGAGACTGAAGTTAAAGGATTTACTAAGTTTTTCTCCTTCCTCAAGCGAATGAAAGGACATCGCGGACGCTCGCCTCACCTGCGGCCAGGAGTAACACCTGCTTCAGTGCAACTCTCATCCTCCCTTCTGGCCTGAATAAGTGCATGTTGGTGTCTTAAGGAGTGTTTTCAGCCATGTGCTCCAGCGGGCAACCTCTGTGTGCGGGAAACAGACCCAGCAGTCGTGGGGGCTCCAGCTCTGGCTCTCAGTATGCCCTGTGTGCTCTTGGCGTGGGTTTGGTGGCACTCGGAGTGGTCATGATCGTATGGAGCATCGTCCCTTCTGAAGCTGCACAGGTGCACAATGTTACAGCCGCCAATAATGGAAGTACCAACACCGACCAAACCAAAACGTCATCCATCGCATTTGTGCTTGTTGGCTCCGGGGCTGCCATGCTCTTGCTCGCCATATGTTTAGGGGTGAGGAACAGGAAGCGGAGGAGACAGGGGGAATCTGCAGGTGCGAACGGTGCTGATTATGTGGATCATGTGCGTAGAGTTCCGGATGAGGACTCAGCTGATGAAGCAGCACCAACCTACGATGTTCCGACCTACGAGGAGGCAGTGACCAGCGGCCAGTACCCCATTCGTCAGAGCAACTTACGCCAAAGCTACCAGCTACCCTCCTACGAAGATCTGATCACTGCTGTTGAAAATGAAGGCCAGCCACCGAAAGAAGGTAACACCCAAGAAGCCCTTCAGCCTCCTCCAGGCCCCGAACCACAGCCTGCAGCCCCAGCTCGCAGCACCAGCAGAGCCAGCCGAATCCTCAGACCCCTGCGGGTGCGCAGGATCAAGTCCGAGAAGCTCCACGTCAAGGATATTCGCCTGAACATCCAGAACCCTGCGCAGGGTGGAGTGGTGACCATTGAACCACTGACTCCACCACCGCAATATGAGGACAAACCCCCTCAGCTGCCCACCGGAGCAGTATAATAAGTTCTGTGCACAAGCCTAAAGTTTTCCATGGGTTCAAAATATGCCAAATGATGAATTAGAATATGTTTGTGCGTGTGCACTGTCTCTGCGCTTTTTGGACAAAACACTAAAGCCTACTTGAATGTGTTTCAGCAGACCTTTTCTTATTTGAAGAGcagtatgttgttgttgttgttgttgttttttatttgaatctAAATGAGGAAGGATATGAATGCCACTGAGCAGCtcttgtgagagagagagattcataGTTTACTTCCAAAGAACTACAATGTACGTTGCTAAAGCTAATAACAATAGAAA

Function


GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5373 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM51 (transmembrane protein 51).

Ensembl:

ensembl_id ENSDART00000145655

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00008798 lncRNA downstream 356239 25475305 ~ 25476980 (-) False XLOC_004150
TCONS_00007926 lncRNA downstream 356239 25475305 ~ 25476980 (-) False XLOC_004150
TCONS_00008797 lncRNA downstream 356637 25475305 ~ 25476582 (-) False XLOC_004150
TCONS_00007924 lncRNA downstream 420066 25412343 ~ 25413153 (-) True XLOC_004148
TCONS_00007921 lncRNA downstream 424323 25368112 ~ 25408896 (-) False XLOC_004147
TCONS_00008799 lncRNA upstream 766222 26619434 ~ 26666495 (-) False XLOC_004162
TCONS_00007965 lncRNA upstream 1648993 27502205 ~ 27507973 (-) False XLOC_004167
TCONS_00007962 lncRNA upstream 1649297 27502509 ~ 27503132 (-) False XLOC_004167
TCONS_00008800 lncRNA upstream 1690366 27543578 ~ 27625465 (-) False XLOC_004169
TCONS_00007969 lncRNA upstream 1739431 27592643 ~ 27625125 (-) False XLOC_004169
TCONS_00007937 mRNA downstream 3507 25782721 ~ 25829712 (-) False XLOC_004155
TCONS_00007938 mRNA downstream 4213 25814441 ~ 25829006 (-) True XLOC_004155
TCONS_00007935 mRNA downstream 55901 25752198 ~ 25777318 (-) False XLOC_004154
TCONS_00007936 mRNA downstream 57772 25755436 ~ 25775447 (-) True XLOC_004154
TCONS_00007933 mRNA downstream 98802 25714095 ~ 25734417 (-) False XLOC_004153
TCONS_00007941 mRNA upstream 29405 25882617 ~ 26040594 (-) False XLOC_004157
TCONS_00007942 mRNA upstream 29405 25882617 ~ 26180714 (-) False XLOC_004157
TCONS_00007944 mRNA upstream 336491 26189703 ~ 26217510 (-) False XLOC_004158
TCONS_00007945 mRNA upstream 338079 26191291 ~ 26207138 (-) True XLOC_004158
TCONS_00007946 mRNA upstream 375706 26228918 ~ 26362334 (-) False XLOC_004159
TCONS_00007931 other downstream 163264 25669839 ~ 25669955 (-) True XLOC_004152
TCONS_00007928 other downstream 300739 25528557 ~ 25532480 (-) False XLOC_004151
TCONS_00007927 other downstream 357034 25476099 ~ 25476185 (-) True XLOC_004150
TCONS_00007916 other downstream 627976 25205153 ~ 25205243 (-) True XLOC_004144
TCONS_00007913 other downstream 865332 24967771 ~ 24967887 (-) True XLOC_004142
TCONS_00007940 other upstream 4729 25857941 ~ 25931082 (-) False XLOC_004157
TCONS_00007943 other upstream 166887 26020099 ~ 26180714 (-) True XLOC_004157
TCONS_00007948 other upstream 380515 26233727 ~ 26237953 (-) True XLOC_004159
TCONS_00007950 other upstream 520786 26373998 ~ 26375518 (-) True XLOC_004160
TCONS_00007954 other upstream 716319 26569531 ~ 26577209 (-) True XLOC_004161

Expression Profile


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