RNA id: XM_026924556.2


Basic Information

Item Value
RNA id XM_026924556.2
length 3941
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC113532877
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 6831234 ~ 6840971 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACGCACTGCTTGGGTCATTCTGTCACCAGCGCGCTGACGTTGGATAATTAAGACATGCAATTAAGGGCACTACAGATTCTTGCATGGTATTTTTGGAGGGCATCTCTGCACTAATTAACAATGTTCGTCCAGttggggttttattttttaaacttcctGCTTATCACCAATTTATCCATGTGTGTAGAAATCGATTTTTGCGAACTTGTGCAACTTGGCAGCGCAGCCAGTGAGAACGGGGAGATAAGAACGGATAGCAGCATGGTTTTTCAAATGAACGCTTTTAAACAGCTCTTCCAGCTGAACGTCGTACCTGACTCCAGTTTTCTCGCACCTGACATCGCGTATGAGAGACATACAGGAGCAGTATCCTCTCTGCACCGCTGCTTCTACTCCGGGGATGTGAACTCGGACCCTTCCTCCTCCGCggctctcagtgtgtgtggaggagtgCGCGGCGCGTTTTCTTATAACGGTATGGAATACGATTTCCAGGTCAGAGGGAATGAGACCGTTGATGGATTTCCCTCAAGCGCTGGAAAGACGCACATTATACGCCGCCGGACTCACTATAATGTCACTTCAAGATGTGGAGTAACATCTGGAATGAACCCAGGCACTGCAGAATCACTGCAAATGCGCGAGCGCGTAAAGACGCACGCAGAAATACGAACCAAGGCTGCTCTGAAGGGCACAAACAGGACCAAAAGGTTCGTTTCTCTGCCCAGGTATGTGGAGGTGTTGATTGTAGCTGACGAGTCCATGGCCAAGTTCCATGGGGACGACCTGAGACATTATCTTTTGACTCTTATGGCTGTTGCTGCCAAGCTGTACCGGCACCCCAGCATCATGAACCTCATCAACATTGTAGTAGTGGATGTGCTGGTGATTTATGAGCCTGAGGAAGGACCCAAGATCTCCAGCAATGCTGCTGTCACACTGCGCAACTTCTGCACCTGGCAGAGAAGGTTGAACAAGGCGAATGACAAACACCCCGAGTACTGGGACACTGCTATTCTGTTCACAAAGCAGGACTTGTGTGGGGCTACCACCTGTGACACCCTGGGCATGGCTGATGTTGGAACCATGTGCGATCCCAAAAGAAGCTGTTCAGTTATTGAGGATGATGGTCTACCTTCAGCCTTCACCACAGCACATGAATTAGGCCATGTCCTCAATATGCCACATGACAATGTGAAGGCCTGTGAGATGTTTGGGAAACTAAAGGACAACCACATGATGTCCCCTACCCTCATCCAGATTGATCGCAACAGTCCCTGGTCCAGCTGCAGTGCAGCCATTGTGACCAACTTCCTGGATGCCGGCCATGGTGACTGTCTACTGGACAAGCCCCAGAAAGTGCTTGTGCTACCAGATGATCCTCCGGGAACTGCCTACAGCCTCAGCCGACAATGTGAGTTGGCATTCGGCTCTGGGTCAAAGCCCTGCCCGTACATGCAAGCCTGCTCAAAGCTGTGGTGTACAGGAAAGGCCAGGGGACATCTGGTGTGCCAGACTCGCCACTTCCCCTGGGCTGATGGCACCAGCTGTGGTAACAACAGGATATGCTACAGGGGTGCTTGCACTAATAGGAACACCACAATTAAACTCACGGTAGATGGACAGTGGGCTAAATGGGGAGCATATGGATCTTGCTCTCGAACATGTGGCGGAGGAGTTCAGTTGGCAAAAAGGGAGTGCAGTAGCCCTGTTCCAGAGAATGGGGGCAAATACTGCCAAGGCCTGCGTGTAAAATATCGCTCCTGCAGTCTGGAGCCATGCAAATATTCAGGCAAAAGTTTTCGTGAGGAGCAGTGCGAGTCTTTCAATAACTTCAGCCTCAACACCAACAGACTTGGACCCTCTGTGACATGGATCCCTAAATACTCTGGAGTTTCTCCAAAAGACAGATGCAAGCTTATCTGCAGAGCCAGTGGCACAGGATACTTTTACGTACTTGCTCCAAAGGTTGTGGATGGAACGCTCTGCTCCCCAGATACTTCAGCAGTCTGTGTTCAAGGAAAGTGCATTAAAGCAGGTTGTGATGGAAAGCTGAGCTCAAACTTAAAGTTTGAcaagtgtggtgtgtgtggagggaaCAACCAGTACTGCCAAAAATTCTCTGGAGTGTTCACCAAACCTGTACACGGATATAACTTTGTGATCACTCTACCAGTTGGAGCCTCAAATGTAGACATTAGGCAACGTGGCTACCGTGGTTTGGTAAATGATGACAACTACTTAGCCATCAAGAACATTCATGGTCAGTACCTTCTCAATGGGAATTATGTGGTATCTACTGTTGGGCAACACATCATTGTAAATGGCACTACACTGCGCTACAGTGGAACATCCACAGCTGTGGAGAAGCTGCAGGCACTGAGACCTCTCCAGGAGCCCCTGACAGTGGAGGTGCTGTCTGTGGGGAAAATGACACCTCCCCGTGTTCGCTATTCATACTACCTGACCAAGGTCAAAGAGGGGAAGATTctgaagaaggaggagaagaagcaTGTACAGAACAGCATTCTGGTAGACACCAACAAGGTGCAACTAAAAAAGCTAGCCTATCAGAAACCTTCCAGTAAATGGGTTGCCAGTGACTGGGAAGAGTGTTCTGTAAGCTGTGGCAATGGCTTTCAGAAAAGACTTGTCCAGTGCCTGGACTCAAATGGGAAAGCAACTGCATATTGTGACAGCACCCAAAGGCCTAGTTCTCAGAAGGTTTGTGGTGACCCTTGCCCTATGTGGAGTATCGGTGAGTGGTCTGCTTGCTCAAAAAGCTGTGGGAAAGGTTTCAAAAGAAGGCCTGTACGCTGTATCACACAAACTGGGCTACTCCTACCCAGAGACCACTGCTCAAGCAAGAGGAAGCCCCAAGAACTGGATTTCTGCACTGTTCAAACCTGCTAGAGACTTGTTAAGACTTGCTAGAACTCCTTTAAGCATTGCAGACATGGTCTATAGAACTGTTCTTTTCAGTCTAACAAAACATCTTGAATTACGTTTGCTGTCACTTGTGTCTCTCATGGTACCTCACATGTGTACCATGATTCAACAGGAGACAGTGACCGGTGAGACTGCAGACACACATGATTGGAAAGGCTGAGGTACAaacgttatcatttctgtgaTGATTTGAAGTCACATGTAACCTACCTCGAAAAGACACTGATCATAGTACAAGATCATTTGTTTTATGATCATAACATTCATCTTTATGTTGCAAAAATTgacatatacaaaataaataggGTTATAAATAGGGTTCGAGATTACAGTGAAAGAATCTGATTTTCCTTAGGTGCATGGGTTAAATGTGAAGCATTGCTCGTGCActacaaaatattataatattggtTTCATTTGTTGATTCTGTCTTTGTACTGCAAAATATCCTCACTTCATGCTTTCTAGTATAACTACATTCACAATTAAACAGACACACAAGTAAAACCACACAGGCAAAAACTGTTTGTGACAAAATATTTGTCATTTcctattttaaacatttgtataTGTGAATCACATTTAATTGTAGGCATTTGTAATTGTTGAATACAGTATTTCCCATCAGTGTGATTATTTTACCCTATCAGTACACTCTAGCTGCAAATATGATGACTTTGTTCCCATCAACATGTTCCTCCATGTTCCTTCAAAGTAACTGAACCCACTTGTGTATACTGGTTTCATTCTCTGCTGTATTTGAGGAGATCTTTTCTGTCTAGTTAGACAAGACTTAAATATCTATTGctgtttatgattttatttaggAAGGGTTAggaaacttttttctttctaaaaactCATTCTGAGGATTGGTTCTGTATGTTGTATCTTTTGACGTAGTACGAAGCACTTATATTTTGTTACCAGTTTCCTttgtatactgtgtatacatTATTGTAACTgtgcataaataaacatttatgcatGA

Function

GO: NA

KEGG:

id description
K08629 ADAMTS15; a disintegrin and metalloproteinase with thrombospondin motifs 15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262458 lncRNA downstream 24867 6806155 ~ 6806367 (-) True G221659
TU262426 lncRNA downstream 69447 6760656 ~ 6761787 (-) True G221633
TU262435 lncRNA downstream 71616 6759410 ~ 6759618 (-) True G221638
TU262406 lncRNA downstream 142923 6687589 ~ 6688311 (-) True G221618
TU262299 lncRNA downstream 191405 6639043 ~ 6639829 (-) False LOC113532805
TU262483 lncRNA upstream 26813 6867784 ~ 6870274 (-) True G221681
TU262484 lncRNA upstream 30766 6871737 ~ 6871979 (-) True G221682
TU262485 lncRNA upstream 31860 6872831 ~ 6873359 (-) True G221683
TU262657 lncRNA upstream 281746 7122717 ~ 7124202 (-) True G221812
TU262663 lncRNA upstream 292546 7133517 ~ 7178296 (-) True G221814
XM_034310652.1 mRNA downstream 74968 6748916 ~ 6756266 (-) False tubd1
XM_026924352.2 mRNA downstream 75858 6748916 ~ 6755376 (-) True tubd1
XM_034310811.1 mRNA downstream 177816 6620567 ~ 6653418 (-) False LOC113532805
XM_034310810.1 mRNA downstream 191405 6620567 ~ 6639829 (-) False LOC113532805
XM_034310809.1 mRNA downstream 191405 6620567 ~ 6639829 (-) False LOC113532805
XM_026924088.2 mRNA upstream 42157 6883128 ~ 6888991 (-) True LOC113532633
XM_026924665.2 mRNA upstream 90551 6931522 ~ 6936069 (-) True atf5b
XM_026924666.2 mRNA upstream 90551 6931522 ~ 6935788 (-) False atf5b
XM_034310612.1 mRNA upstream 118152 6959123 ~ 7039860 (-) False phldb1b
XM_034310607.1 mRNA upstream 118152 6959123 ~ 7039860 (-) False phldb1b
TU261846 other downstream 806923 6021220 ~ 6024311 (-) False dynll2a
TU261738 other downstream 1027356 5797985 ~ 5803878 (-) False LOC113532612
TU261666 other downstream 1120343 5710098 ~ 5710891 (-) True G220990
TU260466 other downstream 3014447 3811560 ~ 3816787 (-) False LOC113544484
trnap-cgg_8 other upstream 354552 7195523 ~ 7195594 (-) True trnap-cgg_8
XR_004579456.1 other upstream 551444 7392415 ~ 7463499 (-) True zgc:77784
TU263800 other upstream 2100047 8941018 ~ 8946899 (-) True G222809
TU264952 other upstream 3467089 10308060 ~ 10312487 (-) False LOC113533081
XR_004579509.1 other upstream 6099939 12940910 ~ 13007559 (-) True nf1a

Expression Profile