RNA id: XM_026924611.2


Basic Information

Item Value
RNA id XM_026924611.2
length 1524
RNA type mRNA
GC content 0.51
exon number 10
gene id cadm1b
representative False

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 7745299 ~ 7907858 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAAGCCAGTGACAGGGAAGATTTTGCAAGAAATTCTACAaacaatttgatttttttccctctcatttgACACATAAATGTACTTTATTGGTGTATGGTGTGTGGTGTAATGGTTTCCCtgttcctcatcctcctccttctccttcccCGCATCTCATTATCCTCCAGAGCGTCTCTAGGTGATTTAGCGCCGCCAGTCTGGAGCAGGTGTTCAACATGGCGAGCTTAGCGAgcggatctctctctctctcactcttcacCTGGCTCATTTTAACAGCTTTTCTGCGCCAAGCACAGGGTCAGAACCTGGTGACGGCAAACGTGTCAGTGATCGAGGGTGAGACGGCCACCATCAGCTGCCGGGTGAAAAACAACGACGACTCGGTCATCCAGCTCCTCAACCCTAACAGACAGACCATTTACTTCCGAGACGTCAGACCTCTTAAGGACAGCCGCTTTCAGCTGGTTAACTTCTCTGACAATGAGCTACGCGTGTCGCTGTCCAACGTGACACTCTTGGACGAGGGAAGATACGTGTGCCAGCTCTACACGGACCCCCCGCAGGAGGCCTACGCTGACATCACTGTCCTGGTTCCACCAGGCAACCTAATCATCGAGTCACGTGAGGATGTGGTGAGCGAAGGGAATGAGACTGAGATAACCTGCACGGCCATGGGCAGCAAGCCCGCCTCCAGCATCGTTTGGATGAAAGGAGATCAGATCCTACAAGGTGAGGAAACAGTGGAGGAGACGTATGACAGGATGTTCACCGTTACTAGCCGGCTCAGGCTCACCGTCTCCAAGGAGGACGATGGAGTGGCCGTCATCTGCATCATTGACCATCCAGCTGTGAAGGACTTCCAAGCCCAGAAATACCTGGAAGTGCAATataaaccAGAGGTAAAGATTGTTGTGGAGTTTCCAGAGGGCCTGACAAGGGAAGGAGAAAACCTCGAGCTGACCTGCAAGGCAAAAGGCAAACCTCAGCCTCATCAAATTAACTGGTTCAAAGTAGATGATGATGTTCCCTCCCACGCAGTGATTACAGGCTCTGATCTCCTCATCGAGAACCTCAACAAGTCCTACAACGGGACTTACCGCTGCGTGGCGTCCAACTTAGTCGGAGAAGCATATGATGACTACATCCTTTATGTCTATGATGTTCTCACCACAACCCCCCCACCCACTACTACCATCATCCACCCTGATGCTGCCCAAGATTCGAGAGCAGATGCAGCGGCACAGAAAATCGACCACGCTGTCATCGGCGGAGTCGTCGCTGTGGTCGTATTCGCCATGCTCTGTCTGCTGATTGTTTTGGGACGCTACTTTGCCAGACATAAAGGTACCTACTTTACCCATGAAGCCAAAGGAGCAGATGACGCAGCAGACGCCGACACAGCCATCATCAACGCCGAGGGAGGGCAAACCAACACGGATGACAAAAAGGAATATTATATCTAACTGACTCTGTTAGCGTCTCTCCCTGCTGGACGAGAAGAGTGAGAGTTCTGTCGGGTTTGG

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403360.2 lncRNA downstream 168243 7576554 ~ 7577056 (-) True LOC113532601
TU262771 lncRNA downstream 372979 7371370 ~ 7372320 (-) True G221902
TU262694 lncRNA downstream 524370 7218666 ~ 7220929 (-) True G221844
TU262663 lncRNA downstream 567003 7133517 ~ 7178296 (-) True G221814
TU262657 lncRNA downstream 621097 7122717 ~ 7124202 (-) True G221812
TU263284 lncRNA upstream 224505 8132363 ~ 8132704 (-) True G222367
TU263294 lncRNA upstream 254775 8162633 ~ 8162848 (-) True G222377
TU263325 lncRNA upstream 288947 8196805 ~ 8197207 (-) True G222391
TU263469 lncRNA upstream 333206 8241064 ~ 8242176 (-) True G222522
TU263531 lncRNA upstream 496992 8404850 ~ 8406183 (-) False sorl1
XM_026924934.2 mRNA downstream 153481 7578055 ~ 7591818 (-) True jam3a
XM_026924702.2 mRNA downstream 169022 7571201 ~ 7576277 (-) True vps26b
XM_034310356.1 mRNA downstream 181705 7549827 ~ 7563594 (-) False acad8
XM_026924022.2 mRNA downstream 184386 7549827 ~ 7560913 (-) True acad8
XM_026923891.2 mRNA downstream 281800 7392415 ~ 7463499 (-) False zgc:77784
XM_026924504.2 mRNA upstream 214556 8122414 ~ 8137209 (-) True LOC113532837
XM_034310363.1 mRNA upstream 295804 8203662 ~ 8212072 (-) False dixdc1a
XM_026923916.2 mRNA upstream 295804 8203662 ~ 8212072 (-) False dixdc1a
XM_026923915.2 mRNA upstream 295804 8203662 ~ 8212072 (-) True dixdc1a
XM_026924164.2 mRNA upstream 496971 8404829 ~ 8478912 (-) False sorl1
XR_004579456.1 other downstream 281800 7392415 ~ 7463499 (-) True zgc:77784
trnap-cgg_8 other downstream 549705 7195523 ~ 7195594 (-) True trnap-cgg_8
TU261846 other downstream 1720988 6021220 ~ 6024311 (-) False dynll2a
TU261738 other downstream 1941421 5797985 ~ 5803878 (-) False LOC113532612
TU261666 other downstream 2034408 5710098 ~ 5710891 (-) True G220990
TU263800 other upstream 1033160 8941018 ~ 8946899 (-) True G222809
TU264952 other upstream 2400202 10308060 ~ 10312487 (-) False LOC113533081
XR_004579509.1 other upstream 5033052 12940910 ~ 13007559 (-) True nf1a
XR_004579489.1 other upstream 5162278 13070136 ~ 13080860 (-) True wsb1
TU267049 other upstream 5459905 13367763 ~ 13368850 (-) True G225622

Expression Profile