RNA id: XM_026924665.2


Basic Information

Item Value
RNA id XM_026924665.2
length 2931
RNA type mRNA
GC content 0.41
exon number 4
gene id atf5b
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 6931522 ~ 6936069 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGTGCTTCTCCGGTGCCCAAAAGTTTTAGAAACGTTTTTTTTGCTCCCTAGATCATCTTGAACATCAAATGGTTTGAAGAAGACAGGATAAGAAGATGCTGTGTTAATGTGAAGCCGCTCTTTTCCTGTGCCTGGTGGAGTTTACCTGGTGGACAGCACACACTTCAGCCCACATCAACATGGAGTATCACTTTTTCTTGCCATTGCGCTGTGTGAAGCCCTCCTTGAATTCTGACACATTTGAGTACACAATTGAGTGCGTCAAGCAAATCAGAGAACATTGTGGCATCATAGATCCTTTTCTGCAAAATTCTCCTCATTTGCAAAGCCGACCTCCGAATTCTCTCTTTCCCACTGGCTAATGACAGCCAATCCCAGACAAGAGGGGAGGAGTCTACACAGACGTATGGACGTACATtgATTGGATGACAGAACATTTTGACACCTACCCACTTTCAGCATCAACTGAATCGTCTCCTGGCTCATCGATTCCACCTTCCCCCTTGGAACATGATGTCCAGGTGCCCTCTGATTTGGAGGTCATGACCTCTCTCCTAAAAGAAGAACTTGCCCAACTCGAGGATTATTACCTATTTGAATCAGCGCCCATGAAAGCAGAGAAATGGCAGAAATGTGATAAAGGCTACCAAGCAATGTCCGCCCCATCATATTACCAGTTACCCTGCACTTCATACAACGTGAACCAGTCCGAATCGAACCCCAGGCTCGTTAGCCTGGCAACAGGTGAGCTTGACCTGAGAGGGTTTTGCGGCAGCTCTGTGGGAAGATCTAAAAcatccagacctgctccttacAGCTATGTTCGGACCCACTCCACTAGCCAAAGGATAGCATCGAATGGTTGCAAAGACGTGGAAGTTTTTGAGAAAGAGACATGGACTTTCAAAGGGACTCATTCAGGTTATGCAGAGATGGCTTTAGACCAGTGTTCTGTTGACAAGATTTTTGGGAAGAACCATATTGGTACGAAAAAGGTTAGAGAATGTGCCATATTGctaaaggaagaagaaaagagaagttTCACTGAAGATGTTTTTTACAGAGCAGAGATGGTGAAAAGTTTTGATGCTGGTGCACCACTGGATGCCCACCACAGGAGAGAAGGTCAAGCTCCTGGAATGAAGATGCTCGGTCATGGTCATGAAGCTGTTGCGATGCCAGTACTGCACTGCAGTGAAAACGGAAGTAGTCCTGCATTTAAACACCCAGAATTAGCTGAGTGTTACTTTAGTCAGATTACTGCCAATTTAGAACCATATCATGGCTTTATGAATGAGGTAGATCCGTCAGTCCGGTCTGGGGCTGTCGAGTCTATGAATAGTGGTTACTCAAGCCATGAATGCCTTGTAGATCAAAGCTTTGATTGTCTGTCCGGAGACAGTGTTGGATCCTCTTTGGAGTTCCCAGCACAGAAACCAATGCAAAGGCTAAGAGaaaacctgtgtgtgttcaAGCCGGAGGTCAAAGTAAGTTGCCTGGAAAGGAGTCATGGAGAGCGCAAGCAGAAGAAAAGAGACCAGAACAAGACAGCTGCTTACAGGTATCGACAGCGGAAGAGGGCGGAGCAGGACTGCTTGGAGGAAGAGCTTCATGGATTGGAAGGGAGAAACAGGGAGCTGCGAGACAAAGCCGAATctgtagagagagagatccagTATGTCAAAGACCTCCTGATTGAAGTGTATAAGGCTCGGAGTCAGCGCCTCAAAGAGGATTCCAGTGCCTAAACCTGTTCTAAGCACCAGCATTGAAAGATCAGGACTTTTTCGGCAAGGACTTTTTTAACAAGCTCTGGTAGTATGTTTTTGACGTTCAAAGTAAATGATAAGACTGAGAAAAGAGCTCTTTGCTGGGTTTGCTAAATAGAATTTAGCAAATTATGTAATGAACACTGTGATACTAGCCTTAGGCTGACCAGTATTCTTAGTATTCTAATGAGAGCTAAAGATATTATGCATTTTCATGATTCGGTTtgacttttttgcttttttttattattattattattattattattattacaatccTCTGTgcttattaaatcatttataccaaaaaaagagaaaccaaCAGCTATACTACATATGCTAGCtcagatgtgtgtttgttgtgtgggGCATGATGGTACAGCTTAGTGAGGACTTGTAAGAATGTTATTGCAAATAATTACTGCTATTTTTTTGCGCTGTAACTATAAAGCCCAGTAATGTTAAGTGTacttcattttagtttttactGACATCaccatttttgtattttcatattttattttgcgtgtacatgttttttttttaacgatgCAGGATAGTTTTAAGAGTTTTTTTcaatcacatttaaaacagtGTACATTACCAGCCAATGTACTGTGGTTTGAAGCACACTAGTAAGCTTTTAGATTTCTTGGTAACTTCACTGGCTCAGGTACTGAATGCATGTCAGAAATATTGAAAAGCATGTTAGGTGACAATTTACTGCATGACTCTTTATATGACTGCATTGTACATTATGACAGCAAGTAGACTTTGTTTCTTCCATCAGACCTTTTATTGCCGTTTTCTTGATTACAGGCTGCCAAATTATTTGCTCAATTTGTAAGGCATGGAGTTGCATTAATCAGTATGAGAGGCCGTTTGCTTTCTTGTGCAGGTTTGCGGCAAACAATCACTGTCATTTACTAAAGAGCTTAAAAGACTGTAGGCctaatgtaatttatatttttaatatatatccAGGTGCATATTAGGTCTGCTATGAATAGTTCACTGATCACAATGCTGATATTGGAAGAAAGTACTGCAGGAAATCCTCTGTGTGATAACTGATATGAGCATCAGAATCAAACAGCACAAGTGTGAACCAAATTCTGGCATTTCTGTATACCGgtattaaaaatgattgtttaatGTTGA

Function

GO: NA

KEGG:

id description
K09044 ATF5; activating transcription factor 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262485 lncRNA downstream 58163 6872831 ~ 6873359 (-) True G221683
TU262484 lncRNA downstream 59543 6871737 ~ 6871979 (-) True G221682
TU262483 lncRNA downstream 61248 6867784 ~ 6870274 (-) True G221681
TU262458 lncRNA downstream 125155 6806155 ~ 6806367 (-) True G221659
TU262426 lncRNA downstream 169735 6760656 ~ 6761787 (-) True G221633
TU262657 lncRNA upstream 186648 7122717 ~ 7124202 (-) True G221812
TU262663 lncRNA upstream 197448 7133517 ~ 7178296 (-) True G221814
TU262694 lncRNA upstream 282597 7218666 ~ 7220929 (-) True G221844
TU262771 lncRNA upstream 435301 7371370 ~ 7372320 (-) True G221902
XR_003403360.2 lncRNA upstream 640485 7576554 ~ 7577056 (-) True LOC113532601
XM_026924088.2 mRNA downstream 42531 6883128 ~ 6888991 (-) True LOC113532633
XM_026924556.2 mRNA downstream 90551 6831234 ~ 6840971 (-) True LOC113532877
XM_034310652.1 mRNA downstream 175256 6748916 ~ 6756266 (-) False tubd1
XM_026924352.2 mRNA downstream 176146 6748916 ~ 6755376 (-) True tubd1
XM_034310809.1 mRNA downstream 291693 6620567 ~ 6639829 (-) False LOC113532805
XM_034310612.1 mRNA upstream 23054 6959123 ~ 7039860 (-) False phldb1b
XM_034310607.1 mRNA upstream 23054 6959123 ~ 7039860 (-) False phldb1b
XM_034310611.1 mRNA upstream 23054 6959123 ~ 7039860 (-) False phldb1b
XM_034310610.1 mRNA upstream 23054 6959123 ~ 7039860 (-) False phldb1b
XM_034310608.1 mRNA upstream 23054 6959123 ~ 7039860 (-) False phldb1b
TU261846 other downstream 907211 6021220 ~ 6024311 (-) False dynll2a
TU261738 other downstream 1127644 5797985 ~ 5803878 (-) False LOC113532612
TU261666 other downstream 1220631 5710098 ~ 5710891 (-) True G220990
TU260466 other downstream 3114735 3811560 ~ 3816787 (-) False LOC113544484
trnap-cgg_8 other upstream 259454 7195523 ~ 7195594 (-) True trnap-cgg_8
XR_004579456.1 other upstream 456346 7392415 ~ 7463499 (-) True zgc:77784
TU263800 other upstream 2004949 8941018 ~ 8946899 (-) True G222809
TU264952 other upstream 3371991 10308060 ~ 10312487 (-) False LOC113533081
XR_004579509.1 other upstream 6004841 12940910 ~ 13007559 (-) True nf1a

Expression Profile