RNA id: XM_026924739.2


Basic Information

Item Value
RNA id XM_026924739.2
length 1665
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC113532980
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 7276448 ~ 7283973 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGCCAGAGCACATGGGCCTCTGCTAAACTCACCTGCTTCAGGGGATATCAGTGCTGAAATGGAGCTAATAtgccttttcctttttttaatacatggaATGCCTTTGGCTTTTACTCAGTTTAATGGCTACAACTGTGATCCTGCCTTACACAGTAGATTCCCAGCCGAGCGGGATATCACTGTGTACTGTGGTGTGCAGACCATCACACTGAAGATCAACTTCTGTCCAGTGCTCTACTCAGGCTACACTGATACTGACCTGGCCCTGAATGGGCATCACGGTGATGCTCAATGCCGTGGCTTCATCAACAACAACACGTTCCCCACTGCAGTGCTGTTCAGCATCAGCCTCAGCACACTGGAGGCCTGTGGAAACATGCTGGTGGTTTCTGCAGCTCAGGGCTACAACGCTTTTGGGAATATATCCCTGGTACAGATAGGGAATGTATCAGGCTACATCGATACTCCTGACCCTCCAACCATCATTAGCTACCTGCCTGGTTTGCTTTATAAATTCAGCTGCAGTTATCCTCTGGAGTATCTGGTTAACAACTCTCAGCTGGCATCTTCATCAGCAGCAATAGCAGTAAAAGACAACAATGGCACCTTTGTGAGCACCTTGAGCTTGATTCTATACAATGATTCATCCTTCAGTCAGCAGTTGTCTGTTCCCATGGCTGGTCTGGCTCTGAAGACTAGAGTGTTTGCTGGTGTCAAGGCCACTAATCTAGATAGGAgGTGGAATATACTGATGGATTACTGTTACACCACCCCCTCTGGGAATCCTAATGATGAGATACGCTACGATCTTTTCTTCGGATGTCACAAAGACCCACAGACCACAGTTTTTGAGAATGGGAAAAGCCAAATGGGCCGCTTTGCCTTTGAAGTTTTCCGGTTTGTGAAACACAAAAACCAGAAGATGTCCACTGTCTTCTTGCACTGTGTCACAAAGTTGTGTCGGGTAGATGACTGCGCATTGCTGATGCCGATCTGTGGAATAAGAAGAAAGAGGGAGGACACCACAGCTCCTCATGCTTCCGCTGAAGATGCTATCATAACTGCAGGCCCTATAATCACCAGAGGTGatGAAACCTCAACCACCAACTCACAGCTTGCTCCATCTAGCAACCCCTCCTCACCACTGGACACAGTGACAAGTGCTCTTGTTGCCGGGGTGGCAGTGTTGGGCCTGATGAGCCTGAGCTTCTTCATCCTTTCCATCAGGCTTCTGCGCAGGTCCAGTCCCACACCTCTGACTGGCATAGGGAACCCCAGcttcaaataaaacacacaacccTATTGCAACATCACTGCTTTCTGAATCTTTTTCCACCTGAGTCACTGCCAATTACAGAAATGATGTATTGGCAGGGCCAGAATTCAGGCCATTGTCCGCcatctatttttttcttattattgtgCTATGTTATTCCTTTCAGCTTCTTTATATCTTCTTCTACTTCATACAGTCTTTGGTTTTGATTTACAATTTACTCTTATTGTACTTGTGTAAAAACGTAGACACAGACAGCcaaagtttttgtttattacCTCACCTAGTTGGAATTAtacacccttcatgaaaatgaggaGAAAGTAATATAGTAGAAAGAATAACATATGCAATACGTGATTCTTTGAGCTCAAACTTACAGGGACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262694 lncRNA downstream 55519 7218666 ~ 7220929 (-) True G221844
TU262663 lncRNA downstream 98152 7133517 ~ 7178296 (-) True G221814
TU262657 lncRNA downstream 152246 7122717 ~ 7124202 (-) True G221812
TU262485 lncRNA downstream 403089 6872831 ~ 6873359 (-) True G221683
TU262484 lncRNA downstream 404469 6871737 ~ 6871979 (-) True G221682
TU262771 lncRNA upstream 87397 7371370 ~ 7372320 (-) True G221902
XR_003403360.2 lncRNA upstream 292581 7576554 ~ 7577056 (-) True LOC113532601
TU263284 lncRNA upstream 848390 8132363 ~ 8132704 (-) True G222367
TU263294 lncRNA upstream 878660 8162633 ~ 8162848 (-) True G222377
TU263325 lncRNA upstream 912832 8196805 ~ 8197207 (-) True G222391
XM_026924862.2 mRNA downstream 22842 7229918 ~ 7253606 (-) True alcamb
XM_034310678.1 mRNA downstream 50902 7198831 ~ 7225546 (-) True dyrk1ab
XM_026923930.2 mRNA downstream 81240 7187800 ~ 7195208 (-) True thap12b
XM_026923919.2 mRNA downstream 90185 7177987 ~ 7186263 (-) False map6b
XM_034310861.1 mRNA upstream 71207 7355180 ~ 7365143 (-) True LOC113532840
XM_026924050.2 mRNA upstream 88441 7372414 ~ 7376065 (-) True lim2.3
XM_026923891.2 mRNA upstream 108442 7392415 ~ 7463499 (-) False zgc:77784
XM_026923892.2 mRNA upstream 108442 7392415 ~ 7463498 (-) False zgc:77784
XM_034310356.1 mRNA upstream 265854 7549827 ~ 7563594 (-) False acad8
trnap-cgg_8 other downstream 80854 7195523 ~ 7195594 (-) True trnap-cgg_8
TU261846 other downstream 1252137 6021220 ~ 6024311 (-) False dynll2a
TU261738 other downstream 1472570 5797985 ~ 5803878 (-) False LOC113532612
TU261666 other downstream 1565557 5710098 ~ 5710891 (-) True G220990
TU260467 other downstream 3459661 3811560 ~ 3816787 (-) False LOC113544484
XR_004579456.1 other upstream 108442 7392415 ~ 7463499 (-) True zgc:77784
TU263800 other upstream 1657045 8941018 ~ 8946899 (-) True G222809
TU264952 other upstream 3024087 10308060 ~ 10312487 (-) False LOC113533081
XR_004579509.1 other upstream 5656937 12940910 ~ 13007559 (-) True nf1a
XR_004579489.1 other upstream 5786163 13070136 ~ 13080860 (-) True wsb1

Expression Profile