RNA id: XM_034310847.1


Basic Information

Item Value
RNA id XM_034310847.1
length 2944
RNA type mRNA
GC content 0.46
exon number 9
gene id tp53i13
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 11536635 ~ 11546641 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtgagagagaaagctgagagagagagctctgagagacagaggtgtgtgagagacagaggtgtgtgagagacagaggtgtgtgagagagagctgctCTCTCCGCTTCAGGGCTCTCAGGGTCTCTGAGTGTGGAATGGATTTCCTCCTGTGTTTACACGGAAACCTGCTCAGTGAACAGAGAGCACAGAGGGAGGAAGCAGCGCGCAGTGGCCCTTAGAGCAGTGGACCTGCTTCTGTAAAACAGCTGTGTTGTGTTTGAGTGGCTGTGACTGTGGacactgcagtgtgttacagtcatgAGGCTCAGAGCTCAGGCGCTGATGTGGGGACTTTTCTGGCTCTGTGGGATCAAATGCCACTGCGGACTGACTCAGCTCTGCGACAATGGCAAGGCAAAGCTGGAGACAGACCTCCCTCCTCCGGATGAGTTTCTGTGCCCCAAGCCGAGACCAGTAACCTCAGCCCTGGTGACGTCATCAACCCCGGTaacatccttccatccattctctgtaccgcttatcccaCACAGcatcacagggagcctggagcctatcccagtaaactcggggcacaagGTCCTTGATATTTCCACCAAATATTCTCTACAGCCAACTGAGCATGTCTGCATGGATCTGCCCATAAAATACAATCACACAATCCCCAACAGTGGAGCTCACAGGCCTGTAGGAGCTCAGAGTGGAGAGTACCTGTACTGCCCTCCTCAGCGCTGGATAAACAACCTGAAGGATGGCGCTACAGTGCTCCTGTTTCACCCCTGTGCTTCAGAGGATGCTCGCAGGTGTCTGGCAGCGGTGGCTCACTCCTGCCTGCCTCACTTCATCCTCACCGCTCATCCTCAACTCAGCCAGCACAGAccATTTGCCTTGGTCTCCTGGGGTCACACGTTAGAGATGTCCCACATCACCacagcaggagtgtgtgagtggttaCTCACTTCTTCCTCCAACTTTAACCAAACAACAGCAAGCCAAAGCCAAAATTACAACCTGTATTTGACAAAAGCTGCCCCAGTGGACCGTGTGCTGGATACCTCAGTGAAGTCTCTGAAAGCATGCTGTGTGGAGGCTCTATCTGCATACAAGGCTACAACAAGAGTGAGGAAGATCCGATCAGTCCTGCAGCATgcaaaaggagaaaaggagaaagaagaagTGAAACATTCTGAAAATCCTTCGCCTATCAGCTCTGAGTCCAACACACtaaatcctacacacacacagccactgaACAATAGTGAGGGTAAAAATTCACTATCTATAGGCCCTCATGGCCATGCCACACCCCCTGTCCACGCTGTTGTGGAGACAGACCCAAAGACAATAGCCACACAGGTGAAGAGACTAAAAGAACCACATGGAAACACGAGGGGTGAGGAGCTGGTGGTTAAGCTGCATGGCTCACAGACTGATGTGAAGTCTCAGAAAATGAGCAGCACTGTGGCTGCAGGGAAGCAGCGCATTAAGACTGATGTAGCTGAGCCGAATGCAGGAGGAGGCTGTGCAGTTCCGGGTCACTGCGGACCTCCTGATGTGGCCACTGCAGTGTTAGGAGGACCCCTGAGGGGACGCAAGATGACCATCCAGCGCACCAATGAGGCCGTGTGGGCAGCGGCGGctctgggtttcctcctggtgcTGCTTACGCTTTCAGTGCTCCATACACGACTGTACCGTAACTGCCGTGCTCCATCCAGCCTGTACTGGCGCGAGAGCCAGCAGGACTATGAAAGTGTAGCAGacatcaTTCGCAGGAGGCTGAGGATGGTGggcaggaggaagaggagagtgaGCCAGAGCAGGCGGCAGGAGTGTCCTTTGCTCTCTGACTCCAGCACTGATAATGACTGACTCACTGGATTTGAGTGTATGTGAGGAGTCTGGTCTCTCTCCACTGACTAAAACTGAGTCTGCATTTTATTCCCTGTGGAGCACAGAAGCAAATGCAGGATTCAGAAATCAGTTACATGACCTCAAGCAGGGGTTTTCTTTCCACATCAGTGAAGTCCATAAACATGTATTCTGACTTCTTACTTTATTTAAGccttttaattgtattttttgaaGGTACAGTGCCTCAACACAATATTCACCCCCTAGTGATTATTTACCTTTTGCTGTgttgcaacatcaaatttaagcATAACAGAGTGGGATTTTTTGTGCTTCTGTTGAAGTGACTCTAcaggaattaaataaattaattcgatgtcctcagaattatttgaaaatattgtattatttttgaaaaaaaaaactaaaaaaaacacttaattggtaagtattcaccccctaaTATACTTATATCTAATAtacttaaatttgatgttgAAATATAGCAAAAAGAAATAATCCCCGGGGGTAGGGGACAGAGTATATGTAGTTTGTGAGATGTGCAAAACATATTGGCATGTTGTATAATACAAGAGATGAAGGAGAAAGCAGAAGTATTATTGCTGAGATGCATATCCCATGTTCAGaatgttaaaatatgaaaaattgaaccagtacaatatgttttttttagttgtttaaaacaataagtgttttatgtttataatgcatttgaAGGGTTTCTAGACCTGTATTaatcaaaacatttcaaaaacttTTAAATATCAGTCTTCTGGTTATGCTGTCCAGAAAAAACACTCTTTCTTCAACTGGAACAAAACTGCTCAGCTCAGCCCTGTTCCTTGAAAGTCGATTTGAGGCATGTGTAGAGTAGATTCAGAGAGGCAGACTGGGGGCTTATAAGTGTTTGCAGCTAGGAGTCATCTTGAAGGCAGCAGTTTgctctaaaaatgaaaaattgacACCCCTAAagaatatttcagataaattcaaacaaaataattctgttagttctgaaaaaaataattctgaaaaatTCTGTCAGTATTAAATTTCTCTGAGTTTCCACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265663 lncRNA downstream 63426 11472056 ~ 11473209 (-) True G224375
TU265662 lncRNA downstream 67273 11469092 ~ 11469362 (-) True G224374
TU265659 lncRNA downstream 70392 11465953 ~ 11466243 (-) True G224371
TU265658 lncRNA downstream 71944 11464248 ~ 11464691 (-) True G224370
TU265649 lncRNA downstream 111776 11424629 ~ 11424859 (-) True G224361
XR_004579491.1 lncRNA upstream 67958 11614599 ~ 11644172 (-) False LOC113532936
XR_003403374.2 lncRNA upstream 79225 11625866 ~ 11644172 (-) True LOC113532936
XR_004579490.1 lncRNA upstream 79228 11625869 ~ 11644172 (-) False LOC113532936
TU265713 lncRNA upstream 93518 11640159 ~ 11640359 (-) True G224414
TU265714 lncRNA upstream 96192 11642833 ~ 11643060 (-) True G224415
XM_026924696.2 mRNA downstream 2674 11528057 ~ 11533961 (-) True mmp20b
XM_026924802.2 mRNA downstream 23703 11499939 ~ 11512932 (-) True hif1al
XM_026924427.2 mRNA downstream 76226 11442749 ~ 11460409 (-) True tlcd2
XM_026923984.2 mRNA downstream 96431 11426510 ~ 11440204 (-) True si:dkey-54n8.4
XM_026924197.2 mRNA downstream 115160 11403246 ~ 11421475 (-) False cluha
XM_026924821.2 mRNA upstream 2996 11549637 ~ 11577496 (-) True taok1a
XM_026924969.2 mRNA upstream 179882 11726523 ~ 11817784 (-) True dph1
XM_026924616.2 mRNA upstream 461794 12008435 ~ 12041025 (-) True rpa1
XM_026924071.2 mRNA upstream 497359 12044000 ~ 12049331 (-) True serpinf2b
XM_026924205.2 mRNA upstream 503261 12049902 ~ 12065211 (-) True wdr81
TU264952 other downstream 1224148 10308060 ~ 10312487 (-) False LOC113533081
TU263800 other downstream 2589736 8941018 ~ 8946899 (-) True G222809
XR_004579456.1 other downstream 4073136 7392415 ~ 7463499 (-) True zgc:77784
trnap-cgg_8 other downstream 4341041 7195523 ~ 7195594 (-) True trnap-cgg_8
TU261846 other downstream 5512324 6021220 ~ 6024311 (-) False dynll2a
XR_004579509.1 other upstream 1394269 12940910 ~ 13007559 (-) True nf1a
XR_004579489.1 other upstream 1523495 13070136 ~ 13080860 (-) True wsb1
TU267049 other upstream 1821122 13367763 ~ 13368850 (-) True G225622
TU268481 other upstream 4265748 15812389 ~ 15844783 (-) True G226830
TU268676 other upstream 4572656 16119297 ~ 16165036 (-) False G226991

Expression Profile