RNA id: XM_026924791.2


Basic Information

Item Value
RNA id XM_026924791.2
length 4176
RNA type mRNA
GC content 0.45
exon number 8
gene id nlrx1
representative False

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 9664911 ~ 9674446 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agagagagagagcgggggCTGTGtttcagaaacaggaagtgctgctgtacTGCTGGCGTGCGTTTATCAGTTCATAGCTTTTATGGCGATGGATTAggaggaaatatatatataatctgaaCATAAATCTGCACTGCAACAATGTTAAAGCAGTAGAAGGGGTCTTAAAGGATACCAGAATGTGGCGATTTGGAAGGACGACAGGAACAGGAGCTATAAGCTGGAGATCCTACAGGGCACGAAAAGATTTGCCCCACAAATATGAATCAACAGTTCCAGAGAGaaAAGTGGAGTTCAGCTTTCCACCTAGTGACTTCTGTTGTGTCAGAAAAGCAGGATCCTTATTACATCCCAGTGTTCTTAACAGGTGGATGAGTCCTTGTGGAATGGGGTGGAGTGAACAGGTAAAGTTACTGAGCTCATCGTTCTCTGGTTACAGTTTGAGGTTATATTCTTCTGGCACACCAATCACAGATCCCATAGAGATCCACAAACAAAAGTTAACGCTGTGGTTCAGTCATTTGCCTCGGGAAGAGAAACAGTTTGGGGGTTACTTTTCTCCTGAAACCATGCACATAGAGCCACTTATTCTTGAGAAAACCCCAGAAGACGGAATAGACCTCTCAATTAATCCCttcaaattaaatgaatcacTAAGAAAATCTGTCACAGCTGAACAACTGTTTGACCCAAGACTTGACATCAGGGAGGGACAAGGACTCAACGTATTGCTCTGTGGGGCTGTTGGCACTGGGAAGAGTACAGTTGTCCGTAAGCTGGTTTTGGACTGGTGTGCTGGTTCAGCTCTGTCCCGGTTCAAGCTGGTGGTGCCCTTCTCTTGTGAAGATCTCTCTCAGCTGTCTAAATCCACATCGCTAAAAGACCTTGTGGGTAGAAAGTATGTACACCTTCGCAAGACACCATTTCTCAGTGGAGATAATAACCAGGCCAGTGAGGTCCTCTTCATCTTCAATGGAATGGAGAAGATGAAGTTAGACTTTAGGATCAGCACCACTGAATTATGCAGTGATCCTAATGAGGCTCTTCCATCAGGAGCTGTTGTGGTGAACTTGCTGAGGAAATACCTCCTACCTGAGGCCAGCATTTTGGTCACAACCAGGCTGTCTGCTGTAGATCATATCCCAAAGAAATATGTGAACCGCTATGCTCAGATCTTTGGTTTCAATGATCCTGATCGCCAGAGAAACTACTTCACAAGCAGACTGTTacaacaaagtggaaaaaacccAGGCAAAGATGCAGAATCTTTGATCGAGATGCTCTTCCTCAACCTGCAGCGAGAGAGCCAGTTAGCAGCAGCCTGCTTTTTGCCTTCCTACTGCTGGCTCACGTGCGCCACTCTTCACTTCCTGCACTTTACTGATGCCAAGGCACCCATTCGCACTCTTACTGGTATCTACACAAGCTTCCTGAGGCTTAACTTTGGGGGAGAGGTGCTGACAATAGGAGGAGACCAGTATTCACAAGAGCACCAGAATTCATTAATGCTTTACGTGGTCCGCACTGTAGGGAAGCTGGCTTTCGATGGAGTCAGCAGTAAACATACTTCCTTTTCAGAGACTGACCTTGAACAGTGGGTTGGTGGAGAGATCAAAACTGATGAAGAGCTTCAGCAACTGGCAGTGTTTCGTACAGATGTGCTAGACTTCTTCCTTGTGCCCTGCGTGGAACATGGTCAAAAGCTTACTGATTCAGATGAGAAACGCTATGTTTTTGCTGTTCCAGCCATGCAGGAGTATCTGGCTGCCCTTTATGTTGTTCTTGGTGAGAACAAAACTGCCCTGGAGAAGGTGACTAAGCAAGTATCGTCTGCCCTTGGACAAGCTGGAGAGGACATCACTACCTTAATGACCATTCTATCCAAGTTCATACCTCTCAGGATCTTTGCCCTATTCAACTTACTGAAACTGTTTCCCAAATTTTTTGATCGAGTAACTAGCCTTAGTAGGGGGCGCATCGCTAACACCATGGCTGCAGAAATGTTCCGCTCAGAAGACAGTTACAACGAAGATGTTCTCGATCAGGTAGAGCAAAGCTTGCTGGGAGTACAAGGCCCACAGCCACAGCAAAAAGATGACACAAGGTCCTTTGAGTTGTACCCGATCTTCATGGGAGGTCTCCTTCATTATGGGAACAGAAGGCTACTGGACCAACTTGGATGCGACATTAAGAGCACCACGGTGGCCCAGATCACTCGAACACTGAAGAAGCAGCTGATCAAGCAGAGCCGTAAACAGCAGCCACCTGAGGAGTTGATGGATTTGCTGGTTTTGCTGTATGAGCTCCAGAACCCTCGGCTCACAGCTGAAGTGTTGCAATCCGTCAAGATCATCAACCTGTCCAATGTGCGCATGACTCCACTGAAGGGCTTTGTGCTGAGCTCAGTGCTGAACTGCTTACCTCCTGGCTTTGTGCTGAATGAGCTCAACCTGTCCTCCTGCCATGTCACTCCAGAGTTGCTACACATCCTTTACCCCGCATTTAACAACACCAGAAGCCTCAAGTTGTGTGACAACTCCTTGTTGGACAGAGGAGTTAGCCACCTTCTGGATGCTCTGTCTGGAAACCAGTCTTTACAGAGGCTGTCTCTGATGCATACTGGTCTTGGAGATAGTGCTGCTTCCGAGTTAGCTGCAAGGCTAGCCTTGCACGGTGGGTTAGAGGAGCTAAATGTGGCCTACAACAACATTGGAGATGGTGCGGCACTTAAACTGGTTGACGCCTGCAGAGAGCACCCTACTATTCACACATTGCACCTGTACTTGAACCAGCTAACCGATGTGGGGAAGCAGTCGCTGCATGTCCGTGGCGTTCCTCAGGAAAAAGGTGGAAGACGGGTGAAGGTGCTGGCTTCAGTGACCGAGGGCTCAGACATCTCAgaggactggcatcccattctgAGCATCATAGGGAAGAACTCCTTATCTTGGGAAAGGGAACGTGTACGTGAACAGCTTCTGGTCTTCCTGAAGGATCTGGAGTGGGGCCGTAAACACTCTAGCTTCTGGAAGAAGTTGCACTTCCACAGAGTGGAGCGCATGGTGAGGCAGACTCTGCGCATCCTGGAAAAACAGAAGCACTGCTAATTGATGTAACTGCTTCATTACGTTCAGCCCTGCTGCTCTTCTGGGAAAGTTGAACATACTAGATACAAATATCACATGAAATATGTGTACAAATACTACGTGCAAATCTGGTCTTCCTTCTTTGCATTAATAGTTTGCATTAATGGGTATGTGGAAATTCTTAAATAGGTACTTGAAGACTCAGCTTAGATGCACacaaatatggccaaaagtatgtggacacctgaccaatcacacccatatgtgcttgttgaacatttaCCTTTaacccattccagatttagttcccctttgctgttataataacatccactcttctgggaaggctttccactagattttggagcgtggctgtggggatttgtgctcattcagccacaagagcattagtgaggtcaggcactgatgttgagtgagggGTGTAGTTGACGTTCCAGTTCACCccagtggtgttcagtggggttgaggtaagggctctgtgcaggccactcgagttctttcatTCCACACCTTTTCAAACTGTGTCTTCATGgtcctcgctttgtgcacaggggcatcgccGTGCTGGACAAAGTCgctgggtgtgatgttcaggtgtccacctacctttggccatatagtgtattaaaatTGACATTACCCATtcatgtgtaatatgtgtggaGAAAACCATtacattgcattgcattgcatttagTTTTTTCCTAAATACTTTTGAGGTTTGGTTCAtgaccaaaataaaaattttgttaaaaagtgttagaattaaataaattatgtacCACCCAGGGTTTCCTTGTATGTCAGAGTGCTGTACTGACTAAAAGCATGTCTTTTCATGAAATGAAATTCAATTTGGTGTTAGAGGTATAAATTAGGTTATGTACTGTGCcttaatatttcatttccaGCCATTTCGATACTAACATGGCAGATGCAACGTATTATATGGGTTTGGAAAATTTTAAACCCATTCATGTGcctttaaatacatttccaaaagagaatgtattttgttatttataatgtgaattccaaacaaaaataaataagcaaattgTCTAAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263847 lncRNA downstream 621160 9037480 ~ 9043751 (-) True G222852
TU263563 lncRNA downstream 1116537 8544912 ~ 8548374 (-) True G222610
TU263542 lncRNA downstream 1173627 8464576 ~ 8491284 (-) True G222591
TU263531 lncRNA downstream 1258728 8404850 ~ 8406183 (-) False sorl1
TU263469 lncRNA downstream 1422735 8241064 ~ 8242176 (-) True G222522
TU264411 lncRNA upstream 35988 9710434 ~ 9713059 (-) False LOC113532707
XR_004579474.1 lncRNA upstream 83712 9758158 ~ 9758966 (-) True LOC117599042
TU264417 lncRNA upstream 128046 9802492 ~ 9806485 (-) True LOC117599044
TU264418 lncRNA upstream 128498 9802944 ~ 9806485 (-) False LOC117599044
XR_004579476.1 lncRNA upstream 130227 9804673 ~ 9806509 (-) False LOC117599044
XM_026924793.2 mRNA downstream 277 9655582 ~ 9664634 (-) True pdzd3a
XM_026924787.2 mRNA downstream 16672 9636571 ~ 9648239 (-) False ube4a
XM_026924788.2 mRNA downstream 16765 9636571 ~ 9648146 (-) True ube4a
XM_026924786.2 mRNA downstream 29209 9594954 ~ 9635702 (-) False kmt2a
XM_026924785.2 mRNA downstream 29209 9594954 ~ 9635702 (-) False kmt2a
XM_034310469.1 mRNA upstream 2813 9677259 ~ 9710747 (-) False LOC113532707
XM_034310468.1 mRNA upstream 2813 9677259 ~ 9710746 (-) False LOC113532707
XM_034310467.1 mRNA upstream 2813 9677259 ~ 9706362 (-) False LOC113532707
XM_034310466.1 mRNA upstream 2813 9677259 ~ 9704347 (-) False LOC113532707
XM_026924240.2 mRNA upstream 2813 9677259 ~ 9703924 (-) True LOC113532707
TU263800 other downstream 718012 8941018 ~ 8946899 (-) True G222809
XR_004579456.1 other downstream 2201412 7392415 ~ 7463499 (-) True zgc:77784
trnap-cgg_8 other downstream 2469317 7195523 ~ 7195594 (-) True trnap-cgg_8
TU261846 other downstream 3640600 6021220 ~ 6024311 (-) False dynll2a
TU261738 other downstream 3861033 5797985 ~ 5803878 (-) False LOC113532612
TU264952 other upstream 633614 10308060 ~ 10312487 (-) False LOC113533081
XR_004579509.1 other upstream 3266464 12940910 ~ 13007559 (-) True nf1a
XR_004579489.1 other upstream 3395690 13070136 ~ 13080860 (-) True wsb1
TU267049 other upstream 3693317 13367763 ~ 13368850 (-) True G225622
TU268481 other upstream 6137943 15812389 ~ 15844783 (-) True G226830

Expression Profile