RNA id: XM_026924831.2


Basic Information

Item Value
RNA id XM_026924831.2
length 3346
RNA type mRNA
GC content 0.47
exon number 16
gene id tyw1
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 6305358 ~ 6382839 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGGAATTGAAGGCAGCATAACAACCTCCGCCTCTTTTCCCATAATTCCACAGTCAAAACAACATGGCCGCCTCCTTCTGTGCGCATTTCTGAGCTTTGCTAGCTTACTTATCCGCAAGCCATATTCTAAGTTAGACAGTTTACTTGACGTGTATGAAGTGATAAGAGTGACAGAGCAATGATAGTCTTCTTTATAACCTTATTAACAAATTCTCTGTCCTTTGTGTCCTCGGCAGCAATGccagGGTCTTTGGACAGTGCCTGGCTTTACGCTGAAGCTTTCCTGTTGGCCGTGTGGCACAACAGATTATACGTGTACACTGCAGCTGCGCTTCTTTTCGGGTTATGGTTAACAGTGAACATGACCAGGAAAAAGAACCCTGTAAAAGCCCAAACTTCCAAATCTGAGAAGCAGAAGGAGCAAACACCTGAAAAAGAGAAGGCTGTCCATGTTGCAGGTGTAAGGATTTTCTATGGGTCACAGACTGGAACTGCAAAGGGTTTTGCCAGAGAGCTCGCAGAAGATGTCCAGGCGCTCGGGTTCCAGTCTGATGTAATTGACTTGAAGGATTATGACCCAGAGGACAAATTGTCAGATGAGTGCACCAGTAAAATGATTTGTGTGTTCCTCATGGCCACATACACTGACGGCAAGCCCACTGAAAACGCTGAATGGTTCTGTAAATGGCTGGAGGAGGCATCCACTGACTTTCGCTATGGCAAAACCTACCTGAAAGGAATGAGATATGCTGTCTTTGGCCTGGGGAACTCTGTGTATGTTGGCCATTACAACACGGTTGGCAAAAATGTGGACAAGTGGCTGTGGATGATGAGTGCAGCACGCGTCATGAGTCGCAGCGAAGGCGACTGTGACGTGGCGAAAAGCCGAAACGGCAGCATCCAGGCCGACTTCCAGGCATGGAAAGATGATTTCTTGAGGCGCCTTCAAGCCCTGGCCAAGGGTGAGAAGAAGACATGCAGCTGCGAGTGCAAAAAAGGCTCGTGCAAGAATAAAAAGAAGCACCATGAGGAATCAGAGGGCGAGAAGCACAGCTCTGAGGAGCTGTTTGAGTCCAGCAGTGATCCAGAGTCTGGAGGTGAAGAGGAGAAAGCTCATGGCTCTGTCATCGACCTGGAGGATCTTGGAAATGTCATGAACCACATGAAGAAAGCTAAGAAACAAGTGGAGGAGGACCCGTCGCAACTGAGAAGACTGTCCAAACTGAATGGATTGAAGAAGACTGAGcctgaggaggagaggagggagatGATCACTCCAGCATTGAGAGAAGCGCTCACTAAGCAAGgatATAAACTAATAGGCAGTCACTCTGGTGTAAAGCTGTGCCGTTGGACCAAGTCCATgctgagagggagaggaggatgCTACAAACACACGTTTTACGGCATTGAATCTCACCGGTGTATGGAGACCACTCCCAGTCTGGCCTGTGCCAACAAGTGTGTCTTTTGCTGGAGACACCACACGAACCCCGTAGGTACTGAGTGGCGTTGGAAGATGGACCCTGCTGAGAAGATCCTCCAGGAAGCACTGGAGAACCACCGCAACATGATCCGCCAATTTCGAGGCGTCCCAGGAGTTCGGCTGGAGCGTTTTGAGGAGGGTTTGGCGGTGAAGCACTGCGCTCTTTCTCTAGTGGGCGAGCCCATCATGTACCCGGAGATCAACTCCTTCCTGCGTCTCCTCCACCAGTGCCACATCTCCAGCTTCCTTGTCACCAATGCCCAGTTCCCTGAAGAGATCAGGAGCCTGGTGCCAGTCACCCAGCTGTACGTGAGTGTAGACGCCAGCACCAAGGACAGTCTGAAGCGCATAGACCGTCCTCTTTTCAAAGACTTCTGGCAGCGCTTCCTGGACAGTCTCAAAGCCCTCGGAGAGAAGCAACAGCGCACAGTATACCGCCTGACCCTGGTGAAGGCCTGGAACGTAGACGAACTGAAAGCCTATGCTGAGCTCATTGCCCTGGGCCAGCCAGACTTCATCGAGGTTAAGGGAGTAACTTACTGTGGTGAGAGCTCAGCCAGCAATCTGACCATGGCCAACGTGCCCTGGCATGAGGAGGTCGTCCACTTTGTGCAGCAGCTCGCCAACCTCCTGCCCGACTACGACATCGCCTGCGAACACGAGCACTCTAACTGCCTGTTATTAGCCCATCATAagtttaaagtggatggtgagtggtGGACGTGGATCAACTACGAGCGCTTCCATGAGCTCATTCAGCAGTACAATGAGAGCAACGGTGCCAAGACCTTCACTGCTCTGGACTACATGGCCAAGACGCCCAGTTGGGCTGTGTTCGGAGCTCGAGAGAGAGGCTTCGACCCCTCAGACACACGCTTCCTTAGGAAAAACAAGACCAAGGATATCTCTGGGTGCTGATGTCAAACACTTGCAGCTGGATCTCCATTTTTAACATctgaataaaagaaatacattttataaagacTTTAGTAAAAGGATCTAGGGTTTTGAAGATCTGTACGAATCATCATTTCCCACATAAgaatagaatttttaaaatcttagaTCATTACTTTATTTTCCAACACAAGATCTCCCATGTAAGtctccttttgtttgtttttgaaataTCACACTCAGAATATGCTGGTAGCATGTACCGAGGAGTGGACATGCTCTGCATTAACACTGCAGTCTCTCCGTGTCTCTTTTTCTACATTTCCCCCGACATGGCAGTTTCCGGTTTCTTATTGTCCTCAGTTTTCACCCATAGAGAATCAGTGCGAGGCCTACAGCTTCATTCATTAACATACAGAAAGTCTGAGGCAAAAATATTCCTTTATTCTatccatttaattaaaatgtcacttcACACACTGGCTAGTTCTTCTGTGTAAAATTAGCATAAGGCCAACTTTGTCATGAGCTTTAGTTCGAGGAGTTCTTTAGGGAAGCTAATATTGCTGTGACATTGgcactacagtttttttttttttttttttttttttttttttaactcttgcCTTTTTCTCAGTCTGTGTGCTCCCTTGTGGTTTCCTGCTGTGAATGTAGGTGTTActtgattttctttttgtgaATTCTCATTATCTTTTGTTCAAAGAGCTTTCATCATTTTGAGGttgagtttttcatttttattgagcCTGCTTTACGGTAATATCTGGATTTCAATGCCAGTTGCAGAATGTGAGCATATCATGTGTTTTGACATATTTTCCAAATGTCTCTTTATTCTTAGATTGCTCAAAAGATGTCTCAAATGGTAACTGTTTTAACTGTTTGGATCAGAAGGTGTGGTGCCTTATTGAattctgaataaaatatatgataGTTATTAAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0008033 tRNA processing biological_process
GO:0005506 iron ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0010181 FMN binding molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function

KEGG:

id description
K15449 TYW1; tRNA wybutosine-synthesizing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261982 lncRNA downstream 100428 6203064 ~ 6204930 (-) True G221245
TU261950 lncRNA downstream 212924 6091913 ~ 6092434 (-) True G221214
TU261757 lncRNA downstream 434731 5870401 ~ 5870627 (-) True G221068
TU261709 lncRNA downstream 509905 5795128 ~ 5795453 (-) True G221026
TU261600 lncRNA downstream 705983 5588282 ~ 5599375 (-) False nectin3a
TU262227 lncRNA upstream 34043 6416882 ~ 6417625 (-) True G221461
TU262210 lncRNA upstream 130989 6513828 ~ 6514965 (-) True G221448
TU262299 lncRNA upstream 256204 6639043 ~ 6639829 (-) False LOC113532805
TU262406 lncRNA upstream 304750 6687589 ~ 6688311 (-) True G221618
TU262435 lncRNA upstream 376571 6759410 ~ 6759618 (-) True G221638
XM_026923942.2 mRNA downstream 6408 6233248 ~ 6298950 (-) False caln1
XM_026923943.2 mRNA downstream 14430 6233248 ~ 6290928 (-) False caln1
XM_034310357.1 mRNA downstream 14430 6233248 ~ 6290928 (-) True caln1
XM_026924885.2 mRNA downstream 116988 6182048 ~ 6188370 (-) False fam222bb
XM_034310827.1 mRNA downstream 117302 6182048 ~ 6188056 (-) True fam222bb
XM_026924636.2 mRNA upstream 3340 6386179 ~ 6394307 (-) True zgc:103681
XM_026924174.2 mRNA upstream 64286 6447125 ~ 6488585 (-) False hip1
XM_026924173.2 mRNA upstream 64286 6447125 ~ 6488585 (-) True hip1
XM_026924175.2 mRNA upstream 64286 6447125 ~ 6477503 (-) False hip1
XM_026924502.2 mRNA upstream 128397 6511236 ~ 6513733 (-) True mos
TU261846 other downstream 281047 6021220 ~ 6024311 (-) False dynll2a
TU261738 other downstream 501480 5797985 ~ 5803878 (-) False LOC113532612
TU261666 other downstream 594467 5710098 ~ 5710891 (-) True G220990
TU260466 other downstream 2488571 3811560 ~ 3816787 (-) False LOC113544484
trnap-cgg_8 other upstream 812684 7195523 ~ 7195594 (-) True trnap-cgg_8
XR_004579456.1 other upstream 1009576 7392415 ~ 7463499 (-) True zgc:77784
TU263800 other upstream 2558179 8941018 ~ 8946899 (-) True G222809
TU264952 other upstream 3925221 10308060 ~ 10312487 (-) False LOC113533081
XR_004579509.1 other upstream 6558071 12940910 ~ 13007559 (-) True nf1a

Expression Profile