RNA id: XM_026924891.2


Basic Information

Item Value
RNA id XM_026924891.2
length 4093
RNA type mRNA
GC content 0.39
exon number 32
gene id itgae.2
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 6558532 ~ 6579961 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGCATTCACATAGAGGGCAGGAAGACAACACCGGAAACTGTACATGTGCAGACAATGTAACAGACACTTGTGGCATATGAGTTACTCAACTGCCTCAGCAAGATGTTTGCAGCTGTGCTGTTTATAACAGGAATATACACAGTAGTGGGATTCaacatatacacaacaccagTGAGCAATTTTACAGATGAAGACCCACTGTTTGGTCAAACTATTATTCAATCAAGGGACGGaGTTTTTGTTCCTTCTCCTACCTCTGGAGATGTTTTCAGATGCACAGAGGAAAACTGTTCTAGAATGAAAGTTACtgATGTAATGAAAGGCCTGAGTCCAACTGCATCTATAGCATCCAGGTTTAGTGAAGATAAGGAGCACCTTCTGGTTTGTAACCAAGTTCGGACAAGGAACTCATCAACTGAGTATTTCAACGGAAATTGTACACATGTGTTTGGGCATCAGGAAAAGAGTAAAATCTATCCTGATAAGTTGGTTTTACAGCTACTGGAACAAAATGcaaacaacaacatcaacagcaAAAACAATGACCAAAAATCTCTTCAACAAGaccacgggaggaggaggagagctgTACAGAATGATAAGGACACTGATGAcgatgaagaagatgaagATGCAGGGACAGAGATCGCGTTTGTGCTGGACGGCTCTGGTAGCATTGACCCGCCGGATTTTGAAAGGGCCAAAGACTTTATTTATAACGTGATGAACAGTGTTTGGACAACATGTTTCAGTtgcaaCTTTGCAATAGTGCAGTATGGGAGAGACATAAGGACAGAACTCTCtctgaatgaaaataatgaCAGTCTCGGAGCCTTGGATAAGGTGAAGAACATAAAACAAATTCATGCAATCACCAAGACAGCTTCAGCCCTCTACCATGTTCTCACAGACGTTTTTGTTCCTCAAAATGGATCAAAAAAGAACGccaaaaaaatgattattctACTGTCTGATGGAGAGATGGCAGGAGATGAAAGAAACCTCACAGATGTATTGAACATGCCACAGATGGAGGGGATTGTTCGCTATGCTATAGGGGTGGGGCCAGAAGTTCTGAATAAACCAAATGCAATCAAAGAGATGAAAGAGATAGCTGGCAGCGATAACAGATTTTTCAAGGTTTCTAATTATGCTGCCTTGGAAGAAATTCTTTCTTCTTTGGAAAAAAGCATATATGGGATTGAAGGCATACAGAAGGGAGCAGGATTTGAACTTCAGCTTGCAGAGGCTGGATTTAGCTCTCACTTTACCCATGATGGTTCGATCCTTTTTGGTGCTGTGGGGGCCTATGACTGGAGTGGAGGgatcattttgaaaaaaaataacgaAGAGCCTGTGGGATTTTTTAATGCAACCAAGGAAGAACCCCGATTTTCTTATTTGGGTTACAGTGTGGCATCTGCACATATGGCTAAGAAAACACTATATATATCCGGGGCTCCCAGGTACAACTTGACTGGTGCAGTCTTCATTTTTGATGGGACCAATCAGGATTTGCTACAAGGAGATCAGGTAGGGTCTTATTTTGGATCGGTTCTCTGCTCCTTGGACATCAGTAATAATAAGGTGACAGATTATCTTCTGGTTGGAGCGCCGCATTTCCATGTAAAAGGGGAAGAGGGCAAAGTGCTGGTTTACAAGCTGAATGAAGGGAAATTTGAGAAAGCCTCTGAATTGCGTGGACTAGAAAAGTACATATTTGCAAGGTTTGGCTCTGCCATAGCCAATATTGGAGACATTGACGGGAACGAATTCAGTGATGTGGCAGTGGGAGCTCCTCTCGAAGCGGATAATGCAGGGAGTGTCTACATATATAATGGATTCCATGACGGGATAAAGAACCATTTTTCACAGagAATCACACCCTCAGACTTCGGAATTAAACTTGTGCACTTTGGCCAGGCAGTGAGTGTCATGTCTTTCTCAGAAGAAAACGACCAACCACTAATCAGTGTTGGGAGTAAAGGAGCCATAACTGTATTTCAGAcaattcctgttatcattattaaaccaaatataaatattgatgATACACTAATTACCATTGATAAGCAGAGCAATGATGAATCAAGCAAATTTGAGACAAAGCTCAGTATTTGCTTCAATACACCAAAAGGAGATATTAAATCCGGTCAACTACCAATTGAGTACCATATTGATTTGGACTCGGGTAAAGAACAAAAGCGACTGGTTCATGTCAAGCCTCATGAAGGGAGAAGGAGCTTTACTCTGACAGAATCCCAAACCTGCATCGATCCGATAGTTCTGAAATATGTGGGCTgctctgactgtttttcacctATCAAGATTAGGTTGAGTTTTACATTAACCCCATCCACTGGATTACCTATCCGGGTTCTTGATGCATATACTCCAAAAGAGGCCATAGCAGAGATTAAGTTTCAAAAGGACTGCAGCAGTCAGAATTGTAAGCCTGATATTTCACTGGCTCACTCAAAACTCAGCGATGAAGTTTTAATAATTGGCTCCAGTCAAACCTTGGATATAAAGTTTAATCTTATTAACATTGGGGACAATTCCTATATGACCACTCTGACTCTGACATATCCTGAAATACTATCTTTCAAGaaatctgaaggTGGAACATGTGaggataaaaatgacaaacatcaAATAGTGTGTAAACTTCTGCATCCCATATTCAGAAGCAAGGAACAGACCCATGTTACAATCGCCTGGCAGCCTATCGACAGAAACGCAAAACCCACAGCTTCAATTACTGCTCTCTTAACAGGtggaaATAATGGCAGTGAGGAACTTAGTAGGAAGATGTATAAATTCACAGTGAAGAAAGCCCTTGAAGTTCAGCTTATTGGCGCAGCCACGCCAAACAGATTGACTATTACAGAGGGGGAAGAAAGCAAACAACAATCGCTAGATTTCAATTTTAagCTGCTGGGTGAAAACACATATAAGGCCAAAATAAGTGTGACAATAACAATTGAAAAGCAGTCACAAAAAACTGACATGATCATCAAGAACGTTGAACCAACGAACTGTTCATGGCCCTCTGGTGGAAATGTTAAGAGCACCTACCAGATTGTATGTACTCTGACAGAGTTGCAGGAGATTAAAATTATGGCTCAAACGCATATCCATGACATTCAGgataaaaatgaaaagatcaCTGCCATGGCAGACATTACATTCGATGAGAGCATCTATCATGgaataaacattataaagaCACAGAAAGTAGTGGTTTCACTTATTAAGCTGACAGTTGTGAAGTCAACTGCGCTTATTGTAGGCAGCTCCATTGGAGGGTTTCTCCTTTTAATCTTCATTATCATTATTCTCATCAAGTGTGGATTTTTCCGCCGACGCCATAAGCTGGCTCGCACATCGAGTACAAACTGAGGACATGCACAACGTTGACCTGATTATTACTTATCATTGTCCTTTTTAGACACATCtgcacaaatgttttattattattaaaattgtttttttattattattaatacagttGCAAACACTTTGTTATTTGGGATATCTTATTAACTACCGAATCGCGGGATAGCTCCCAAATGttatttctatgtttttatttttacttaaaattcatttaattccTTTGTTTTCCTAAAACcttgaggtgtttttttttttacctgcccTGTGTAGTTTTCATGTGCTCACAGCTTGTATATGTTTTTTGCCTTCGATTCCTTGTATTACTATACAGGAAGTAAtggtaatctttttttttagctttattcTTAGTCATTTACCCAAAGTCTAAAATTATCAATTTCTATCACCAAAAtgtatgcaaaaataatatttgtcaACTCAGGGCCTGTTCTCTTGCCTTATGTAAGTTaattgaaaaaatgaaagttaaaatTCTGTCTCCGCTTTTATAGAAATGAATAACAGAGCCCATTTTTACACAGGTTTAGCACATGAATGAGAAGTATTTCTATACTCTGAAAAACCTCACTGCTCTCTGCTTAGTCCTTAacgctgtgtttttttattttcatccatTCTTTAACTCTGTCTTTTAATtcatatgaaattaaataaacaattcttTTTCCATGA

Function

GO: NA

KEGG:

id description
K06524 ITGAE, CD103; integrin alpha E

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262210 lncRNA downstream 43567 6513828 ~ 6514965 (-) True G221448
TU262227 lncRNA downstream 140907 6416882 ~ 6417625 (-) True G221461
TU262213 lncRNA downstream 141724 6326091 ~ 6416808 (-) True G221450
TU261982 lncRNA downstream 353602 6203064 ~ 6204930 (-) True G221245
TU261950 lncRNA downstream 466098 6091913 ~ 6092434 (-) True G221214
TU262299 lncRNA upstream 59082 6639043 ~ 6639829 (-) False LOC113532805
TU262406 lncRNA upstream 107628 6687589 ~ 6688311 (-) True G221618
TU262435 lncRNA upstream 179449 6759410 ~ 6759618 (-) True G221638
TU262426 lncRNA upstream 180695 6760656 ~ 6761787 (-) True G221633
TU262458 lncRNA upstream 226194 6806155 ~ 6806367 (-) True G221659
XM_026924405.2 mRNA downstream 4081 6536048 ~ 6554451 (-) True cul5a
XM_034310614.1 mRNA downstream 4318 6536048 ~ 6554214 (-) False cul5a
XM_034310615.1 mRNA downstream 4448 6536048 ~ 6554084 (-) False cul5a
XM_034310618.1 mRNA downstream 25648 6527472 ~ 6532884 (-) False mrpl28
XM_034310616.1 mRNA downstream 25684 6527472 ~ 6532848 (-) True mrpl28
XM_026924070.2 mRNA upstream 4002 6583963 ~ 6605064 (-) True LOC113532622
XM_026924450.2 mRNA upstream 39211 6619172 ~ 6636288 (-) True LOC113532805
XM_034310811.1 mRNA upstream 40606 6620567 ~ 6653418 (-) False LOC113532805
XM_034310810.1 mRNA upstream 40606 6620567 ~ 6639829 (-) False LOC113532805
XM_034310809.1 mRNA upstream 40606 6620567 ~ 6639829 (-) False LOC113532805
TU261846 other downstream 534221 6021220 ~ 6024311 (-) False dynll2a
TU261738 other downstream 754654 5797985 ~ 5803878 (-) False LOC113532612
TU261666 other downstream 847641 5710098 ~ 5710891 (-) True G220990
TU260466 other downstream 2741745 3811560 ~ 3816787 (-) False LOC113544484
trnap-cgg_8 other upstream 615562 7195523 ~ 7195594 (-) True trnap-cgg_8
XR_004579456.1 other upstream 812454 7392415 ~ 7463499 (-) True zgc:77784
TU263800 other upstream 2361057 8941018 ~ 8946899 (-) True G222809
TU264952 other upstream 3728099 10308060 ~ 10312487 (-) False LOC113533081
XR_004579509.1 other upstream 6360949 12940910 ~ 13007559 (-) True nf1a

Expression Profile