RNA id: XM_026934598.2


Basic Information

Item Value
RNA id XM_026934598.2
length 1601
RNA type mRNA
GC content 0.49
exon number 14
gene id odr4
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 17759657 ~ 17772060 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTATCCCAAATGCCTCCTTCTTCCTATTAAAGCGCTTGACGTATACTGTAAAATAACGTCTTTTTACaccctaggtagtgcactaCTTTTTAACACAGTGGTATTTGTGGATTGAGCCACGTAGCTATAAGTGTTTAGTTCCCATTCTTCATTCATGTTGTCTAGAAAGTCAAGAAGCATATGATATATAATCAGTATGGGCAGAGGCTACATTGTTGAAGAGTGTGTGGAGAAGTACCTGACTAACCTGTCAGCAGCTGCTGGGTCATGTGAGACTGGACTTTTCATCGGCCAGtgttcAGCACAGAGGGACTTTGTGGTTCTGGCTGTGCGGACACCTCACAGAGAGACGGAGGGAGCCACAGAGAGCCAGAGAACGCCAATCTTACTGGACAACATTGATGTGGAGTGGGTTGCCGAGCATGCCAGACAGGTTTCTCGGATGCTCCCTGGCGGCGTGAGCGTTCTCGGGTTGTTTCTCATCGCCCCACCTGAGGTGTCAAAAGAAGTGCAGAACACGCTGAAAAAGCTTGTCTTTGCTGTGGATAAATCCATATCCAAAAGCAAGCTGTGGGATCCGTCAGAGGATGATGTGACTGAGCGCATCACCCTGCACATCTGTTCCAAAACAAGGAAAGCTGTCTGCAAAACATTTGATGTTAAAGATCCAAAGTGTTCAGCGAAGCCTGCAGATTGGAAGTATCAGAGTGGCATCTCATCTTCGTGGCCTCTGATCACCTGCAATGTGCAGCTCGACTTGCAGATCCCGGTCACATCAGAAAATGTCGACAAGTTCATAAAGGATGGACTGAGGAACTGGGCTAAACAGATCGAGTCTGCACTCTGTCTCATAAACGGCAAAGCTGTAACAGATGACTCCGAGCTACTATCAGGGCcgAAAAAGAGCACGAAGGCGAGCCAGCAGCAGACAGTTCGAGCGCAGATCCTCGTCTCAGCAGATGATGCAGATGCAGGCCAGGTGTCCAGTGCTGTGGTGAAGGAGTGCAGTGGCTCGGTGTGTCTGAGAGGAGTAGTTCACTGCAGAGCTTACATTCACACCAACAAACCTAAAACCAGACACGCCGCACAGGCACTCAAAAGGGATGTAGTGAACACGGTTTTCAGCCGAGTGGAGATGCTTCTGGAGGATCTGCTCATGAATGAAGCAgCAGATCTGGCGTCTGGGGAGCAGGTTCTTCCACGGCGTGTGTTTGCCCCCATATCCGGCTCtggcttgagtgtgtgtgactacATTTTCCCAGATGAGAGCACTGCGGATGTGGCTGAGCGGTTTAAAGAAATGCTAGGTTGTGACTTACCAGAAGAGGACGTGGACACCAGCATGGAGGCTCAGAcatgttaCTCTGTTTCGGGAGTGGAAGATGGGTGTGATGAAGAAGCCAATCACAATGTGCCTACACAATCCGGCGCTGAAACTGTGCCAAAAACTAAAGCAGCAAGACAATATGCAGCAGGCATGGCGGTGGCAGCTGCGGTTGCCCTCTTGGCCACAGCAACCTCTCTACTCTATCTTACTGAGTAACAGCAAGACCACAGTTGTTTATAACTTCATCAGAAATTAATAAACTATAGAAAATta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269607 lncRNA downstream 270225 17486631 ~ 17489432 (-) False G227786
TU269609 lncRNA downstream 270225 17486631 ~ 17489432 (-) True G227786
TU269582 lncRNA downstream 321071 17434055 ~ 17438586 (-) False psenen
TU269583 lncRNA downstream 321071 17434055 ~ 17438586 (-) True psenen
TU269561 lncRNA downstream 352432 17405948 ~ 17407225 (-) True G227755
TU270036 lncRNA upstream 302536 18074596 ~ 18074799 (-) True G228131
TU270092 lncRNA upstream 616448 18388508 ~ 18392636 (-) True rwdd3
TU270099 lncRNA upstream 645394 18417454 ~ 18418564 (-) True G228188
TU270408 lncRNA upstream 789377 18561437 ~ 18618921 (-) False pxylp1
TU270432 lncRNA upstream 833867 18605927 ~ 18608241 (-) True G228483
XM_026934914.2 mRNA downstream 50038 17694739 ~ 17709619 (-) True pla2g4aa
XM_026934949.2 mRNA downstream 68303 17685877 ~ 17691354 (-) True arpc5a
XM_026934957.2 mRNA downstream 84993 17645397 ~ 17674664 (-) True niban1b
XM_034310587.1 mRNA downstream 139992 17600050 ~ 17619665 (-) False dhx16
XM_034310879.1 mRNA upstream 28024 17800084 ~ 17808962 (-) True prg4a
XM_026935070.2 mRNA upstream 40858 17812918 ~ 17823904 (-) False rxrga
XM_026935068.2 mRNA upstream 40858 17812918 ~ 17823904 (-) False rxrga
XM_026935069.2 mRNA upstream 40858 17812918 ~ 17823890 (-) True rxrga
XM_026935137.2 mRNA upstream 106138 17878198 ~ 17888752 (-) False olfml2bb
TU268927 other downstream 1395353 16363381 ~ 16364304 (-) False si:dkey-118k5.3
TU268923 other downstream 1442312 16316651 ~ 16317345 (-) True G227205
TU268676 other downstream 1594621 16119297 ~ 16165036 (-) False G226991
TU268481 other downstream 1914874 15812389 ~ 15844783 (-) True G226830
TU267049 other downstream 4390807 13367763 ~ 13368850 (-) True G225622
XR_003403925.1 other upstream 1442699 19214759 ~ 19214923 (-) True LOC113539409
TU270720 other upstream 1936255 19708315 ~ 19708841 (-) True G228758
trnae-cuc_28 other upstream 3579183 21351243 ~ 21351314 (-) True trnae-cuc_28
XR_004579494.1 other upstream 3979075 21751135 ~ 21811084 (-) True gdpd5b
XR_004579495.1 other upstream 3979075 21751135 ~ 21811083 (-) False gdpd5b