RNA id: XM_026934618.2


Basic Information

Item Value
RNA id XM_026934618.2
length 1465
RNA type mRNA
GC content 0.42
exon number 2
gene id arl4aa
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 17106590 ~ 17109061 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGTGCTAACTGCCCCAGCTCAGTGTGTACGtgagcgcgcgcgcgtgtgtgtgaagCGTCGCTGCGCAGTGGAGTTTGTCCGAGCGGctgtgatgaaataaaaagggggaaaaaaaaagtttggtaaACAGTAAAGTCCGAGTGAACCTTTGGGAGTAAAACCAGAAGTTCAGTTATGGATCTTTACTTTTGCCTTCTCTTAATCTGACTCCACACCACATGAAAATGGGAAACAGGATATCTGATCAATCCAGTATATTTTCTAATCTTCCTTTCTGGAAGTCTCTGCACATTACTATTTTGGGTCTGGACTCTGCAGGCAAAACCACTGTCCTGTACAGACTGCAGTTTAATGAGTTTGTGAACACGGTGCCTACTAAAGGATTTAATGCAGAGAAGGTCAAGGTGGCCCTCGGCCGCTCTGGGACGGTGACCTTTCACTTTTGGGATGTTGGTGGCCAGGAGAAGCTGCGTCCGCTCTGGAAGTCCTACACTCGCTGCACTGATGGCGTCGTGTTTGTGGTCGACTCGGTGGATGCTGAGCGGATGGACGAGGCCAGAACTGAACTTCACAAGCTTGCACACTCGATGGAGAGTCAAGGTGTTCCCATGCTTATTATAGCAAATAAGCAGGACCTGAGGAACTCTATGACCCTGGCAGAAATTGAGAAGATGCTGGCGCTGAGTGAACTCGGTGCCTCTACGCCATGGCACTTGCAGCCTTCGTGTGCTATAATCGGCGATGGTTTATTAGAAGGACTTGAAAGACTATATGACATGATCCTCAAACAGAGGAAGAAGTTAAAGCAGCAGAAAAAGAAGTGATGGGAAATGTTCAGAACGAGAAAGCAATAGAAATTGGTTTAAACAGTGATCATGTGGAATGGCCCTCATTTGACCATGGTATTTATCAGCTGACTGAGTTTCATCAGTTTCATagtctaatgttttttttttttttttctaatcttctttttttttagttaaagcCCATGGCTTTAAAGAGATCTTTATTAGACCGTGAGTGGAGAATGGAAGAGACAGTTTTAAAATACTGTGCAGGCTGAACGTTTATTACTTGAAGTGTGTTGAAGGAACATGGATGAAGGAAGTATGAGTGTTGGGTGTGTGCTAGTCGTGAGAAGTGTACGTGTCATTTTTCAGGTTAATGTAGGGACCGAGAACATGGACATCAATTACTTCTAGGATTAACCATCAGCGATTCAGattttaatttactgtatttttatctttgaaagtgGGTCTATAACACTGAACCCcgtttattttcatgtgtggttggggttttctttttttcttttggagaAGAaactttttgtctttctctaactttttttgtattgtttacaAGCACTTTAGATGCCATACTTACTTTATGTAAATGTCTGAATATTTAGTGACTATTTTattaagctaaataaatattccTATTGTAAAAACGTCA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K07945 ARL4; ADP-ribosylation factor-like protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269180 lncRNA downstream 193430 16912959 ~ 16913160 (-) True G227440
TU269142 lncRNA downstream 331515 16774853 ~ 16775075 (-) True G227405
TU269123 lncRNA downstream 383398 16717249 ~ 16723192 (-) True LOC117599111
XR_004579542.1 lncRNA downstream 384399 16717250 ~ 16722191 (-) False LOC117599111
TU269041 lncRNA downstream 462505 16643860 ~ 16644085 (-) True G227319
TU269369 lncRNA upstream 52450 17161511 ~ 17163585 (-) True G227589
TU269401 lncRNA upstream 130066 17239127 ~ 17239928 (-) False LOC113539242
TU269426 lncRNA upstream 177282 17286343 ~ 17307724 (-) True G227640
XR_004579543.1 lncRNA upstream 193002 17302063 ~ 17305362 (-) True LOC117599113
TU269561 lncRNA upstream 296887 17405948 ~ 17407225 (-) True G227755
XM_026935128.2 mRNA downstream 227849 16865182 ~ 16878741 (-) False LOC113539389
XM_034310650.1 mRNA downstream 230258 16865182 ~ 16876332 (-) False LOC113539389
XM_034310651.1 mRNA downstream 230258 16865182 ~ 16876332 (-) False LOC113539389
XM_034310649.1 mRNA downstream 231257 16865182 ~ 16875333 (-) True LOC113539389
XM_026935156.2 mRNA downstream 249071 16853179 ~ 16857519 (-) True tspan13a
XM_026935107.2 mRNA upstream 462 17109523 ~ 17113260 (-) True si:dkey-30e9.6
XM_034310833.1 mRNA upstream 462 17109523 ~ 17113245 (-) False si:dkey-30e9.6
XM_034310832.1 mRNA upstream 462 17109523 ~ 17113235 (-) False si:dkey-30e9.6
XM_026934866.2 mRNA upstream 33284 17142345 ~ 17145261 (-) True LOC113539219
XM_026934865.2 mRNA upstream 37874 17146935 ~ 17155966 (-) True tmem106ba
TU268927 other downstream 742286 16363381 ~ 16364304 (-) False si:dkey-118k5.3
TU268923 other downstream 789245 16316651 ~ 16317345 (-) True G227205
TU268676 other downstream 941554 16119297 ~ 16165036 (-) False G226991
TU268481 other downstream 1261807 15812389 ~ 15844783 (-) True G226830
TU267049 other downstream 3737740 13367763 ~ 13368850 (-) True G225622
XR_003403925.1 other upstream 2105698 19214759 ~ 19214923 (-) True LOC113539409
TU270720 other upstream 2599254 19708315 ~ 19708841 (-) True G228758
trnae-cuc_28 other upstream 4242182 21351243 ~ 21351314 (-) True trnae-cuc_28
XR_004579494.1 other upstream 4642074 21751135 ~ 21811084 (-) True gdpd5b
XR_004579495.1 other upstream 4642074 21751135 ~ 21811083 (-) False gdpd5b

Expression Profile