RNA id: XM_026934621.2


Basic Information

Item Value
RNA id XM_026934621.2
length 2692
RNA type mRNA
GC content 0.43
exon number 2
gene id rnf183
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 17594191 ~ 17599439 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAAGATCAGTatcttgtgttttctttcttcactctactgtctttgttttttttgtgttccaTACTGTCAACATTGCAGCAAAGTTCATTTATCTGTGGGGATGAAGTCAAAACAGTTGATAACACTTCCAGGATGTGCAAGCTTTGTTTTGAAGCATGTACTCCTGACcgttaaattgttttattactattttttttccgCACTCAGTGGAAGTATGTGTTACAGTAGAAACCTCAGGTAAATACTTGAATATCCTTAGACAATTACAAAATGGGATCTATGGTATACAGACTCACAGTCTCAACACAATACATACAAATATTCTGTGCTGTTCTTGTGTTAGAAGCTTTGCGCTGTTGTGTTTGTCTAAAAGTTCAAATTCTACCTGGACCAGTAGAACAGGTCTGGCCTAGAGGGGAGGGTGAGTGATGATTAGCACAGGTGAGTAGGAGTAAAAGGAATAATATCAAGCCAGAAAGAGAACGACTGCAGTCTGCATGGATGGTGAAGTAAGGTGAAGGTGAAGAGTGTAAAGGAAGACTCACAACTAGACTGGATTATATGTTGTTGGAGCTGGAGGGTGGCTGCTTCCCGGAGTATTTTACTCTTCCATTCTAAACCTCTGAAGTTCTGTGCCATGACTGACAACCAAGCAAGTGAAGCAGGAGGCCAGGAGAAGTTCAAACCAAACGTCAAACCACAGTATGACCAGAAGGACAGTAACCAACAGGGGGCACTGGAGAAGcgagaaaaatgtgaaataccCCATCGGCGGAGTCGTAGCAGTGACTCAGAGCGACGCGGCAGACAGAGGGAGCGAGAACAGGAACACAGGGGAAGGAGGGAGCGTGGTCGGAGTGAAGAGGCCAGACGTGGCTCAAAGAGAAGCAGCAATGGAAGAGGCATTACTAACTATCCCAGGGACAACCTAGACGAAACGGAGTGTCCCATCTGCTTCTGCAACTATGACAATGTCTTTAAGACTCCTAAGCTGCTCTCCTGTGGCCACACATTTTGCCTGGAGTGTCTGGCTCGCATCAACGTCTCGTCTATGGAGATCAAGAAGCTGTCATGCCCCGTGTGCCGGGAGCTAACAGAAATCCGGCATGGCCGAGACTTGCCACAGCTCGGCAACAATGAGAACGTTTTCCGCAAATTGCCACCTCAGATGCAGAAGGCTCAGTCTGTGCGCTTTGAACGCAGCAAAGGCAAACTGGTCCTCAAGAATGCTCCTCTAACAGGCTGCTTCAGTAAGAAGACCACAGTTCTGCCAGTTGGGGCCATAGAGGAAGGTCTCGCATCAACTACAATTGTAAATGTGGGCAGACCTCCGAACAGGGTGAGAGGTCGCATGGGAAGGGTGTTCCAGTCCAATAATTGCTACTACACCGTGGTGGTCTCCATCATTGTGATCGCGGTGGCTCTGGTAATAGTGGGCATTTTGACCTTTGTGGTGATGCCCAACGTGATTCTTGGAAAGAGACCTCCACATGGGGATAATGTCGAATACAACATGACTAATGGGTAGTGGGAGGCAAAACCTATAAGATGAACTGAGGAAGGGAGCCTAAGAGTAAGAGAGCAAACCAAACTGTAGGAGTTGGTATTGTTACGTGGAGACAACATGGCTGAAACATATCTGTTGGCCTTGCCATCATCCTTTTGTGTCAGTGGCCTAATACAAAAAGGCATGACGCACTGCATATTGTAGACTTTTTGTGAAGGCTGCAGCTTTAACTGTGTGAAGGATAGGCAAAAGAACCTTCTGTTGTATCTGAATAGAAATAATCACCAGACGGAAATACTACAAACACATACTGTGACTATTATAGTTactaaaaaaggaaaaagctaTGAAACCCAAATGTCCCTCCACCCTGTCTTAAGTTTCACAGTGGTATACATGATTGAGGCGTATTTGTACATGTTAGCATGTTTTAGGTTTCTTGTTGCTGGTTATAACaagttgcatttattttctgttccaAAAGTAGATGTCACTGGAGAGCATTCAGGAACAAATCAATATTACTGTTTCTTTAATCTTCTTGTTTCCAAAGTATTTTTAGCATTGTTACAAGGAAGTGTTGGCACCAAtgtaaaaaagaagaaatgcatATGCTGTTggataaataacaataaacagaaaaaaaacaacattgtgtACATTAAGTACAGTTGTTTTATGTTaggtctatcagtaccacgcgtAATCACAAATACCACTGACTGAATGTGCAGCTGTGCCACCAAGACATAATGACGGCCAGTGACGCTACTGGCTGTTAGCAAGGAGATGGTCACAATGTCTTCTAAAGCTGTTATTTAGGACATCCCACAGATCCCGAAGATCAAGTAACAGCAATCTGATCCCAGCAGTCCATTAAACCATTGGCTTACTTCAGTGTCTGGATACACTGTTCCTGATTTGCCAATGTACATCATATTTACCACCCTGTCCTCACTTGGTGACATTAATGTATGGCCTTTTTCTCGCACTAAGTATTGAACGATGATTAGGCATTAGTTCACCTGGAAATGCAAAGCCACCTGGAAGTGCCTCTTCACACATGCCTCATGCCTCATAAACTTCTCTCATGTGGATTGGGAGAAATTGAGATTTCTGTAATAGTACACAAGctgtaaataacatttacacagaGAATCAACAATAAAATTATGTTGTCCACA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269607 lncRNA downstream 104759 17486631 ~ 17489432 (-) False G227786
TU269609 lncRNA downstream 104759 17486631 ~ 17489432 (-) True G227786
TU269582 lncRNA downstream 155605 17434055 ~ 17438586 (-) False psenen
TU269583 lncRNA downstream 155605 17434055 ~ 17438586 (-) True psenen
TU269561 lncRNA downstream 186966 17405948 ~ 17407225 (-) True G227755
TU270036 lncRNA upstream 475157 18074596 ~ 18074799 (-) True G228131
TU270092 lncRNA upstream 789069 18388508 ~ 18392636 (-) True rwdd3
TU270099 lncRNA upstream 818015 18417454 ~ 18418564 (-) True G228188
TU270408 lncRNA upstream 961998 18561437 ~ 18618921 (-) False pxylp1
TU270432 lncRNA upstream 1006488 18605927 ~ 18608241 (-) True G228483
XM_026935118.2 mRNA downstream 4970 17583339 ~ 17589221 (-) True mgat1a
XM_026935119.2 mRNA downstream 5667 17583339 ~ 17588524 (-) False mgat1a
XM_026934965.2 mRNA downstream 13645 17570528 ~ 17580546 (-) True sh3bp5la
XM_026935078.2 mRNA downstream 25644 17518007 ~ 17568547 (-) True gabbr1a
XM_026935080.2 mRNA downstream 31676 17518007 ~ 17562515 (-) False gabbr1a
XM_034310588.1 mRNA upstream 611 17600050 ~ 17619892 (-) False dhx16
XM_034310586.1 mRNA upstream 611 17600050 ~ 17619892 (-) True dhx16
XM_034310587.1 mRNA upstream 611 17600050 ~ 17619665 (-) False dhx16
XM_026934899.2 mRNA upstream 611 17600050 ~ 17618488 (-) False dhx16
XM_026934957.2 mRNA upstream 45958 17645397 ~ 17674664 (-) True niban1b
TU268927 other downstream 1229887 16363381 ~ 16364304 (-) False si:dkey-118k5.3
TU268923 other downstream 1276846 16316651 ~ 16317345 (-) True G227205
TU268676 other downstream 1429155 16119297 ~ 16165036 (-) False G226991
TU268481 other downstream 1749408 15812389 ~ 15844783 (-) True G226830
TU267049 other downstream 4225341 13367763 ~ 13368850 (-) True G225622
XR_003403925.1 other upstream 1615320 19214759 ~ 19214923 (-) True LOC113539409
TU270720 other upstream 2108876 19708315 ~ 19708841 (-) True G228758
trnae-cuc_28 other upstream 3751804 21351243 ~ 21351314 (-) True trnae-cuc_28
XR_004579494.1 other upstream 4151696 21751135 ~ 21811084 (-) True gdpd5b
XR_004579495.1 other upstream 4151696 21751135 ~ 21811083 (-) False gdpd5b

Expression Profile