RNA id: XM_026934741.2


Basic Information

Item Value
RNA id XM_026934741.2
length 2032
RNA type mRNA
GC content 0.44
exon number 8
gene id vtna
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 16460186 ~ 16465868 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTGCACTGATCAGCGGGCCTCATTTCCCCTGATccctcagtgtttcagtgttactcTGGGTGACAGACATGAAGCCTaagctgctgttcctgctgctggCACTGCTGCAAACCGGCCACTCCGCAGACGAGTCTTGCATTGATCGATGTGATATCGGCTTCGATGCCACCAAACAATGCCAGTGTGACTCCTTATGCAAGTACTACAGAAGCTGCTGCAATGATTATGAGTCACTGTGTGACAATTTGACTCGTGGAGACACTTTCCCGTCTTTCCCTGAGGATGAGGAGAACAGCACGGCCATGGCACCTACACACAGTGCCGAGAACATAAACGCAATGACCCTGCCTCCACCTCGTACCAAACATCCAACTTTATTCACTACAGCTCCACCAACCTCAGACCCTGACGCTGAGGTGTGCAGCGGCAGGCCATTTAATTCCTTCATGCAACTCAAAAATGGTTCACTCTATGCCTTCAGGGGAAAGTATTTCTTTGAACTGGATGAGAGGTCAGTGTTGCCAGGTTATCCAAAACTCATTGAAGACTTTTGGGGGATAAAAGGGCCTATAGATGCAGCATTTACACGCATAAACTGCCAAGGAAAAACATACATCTTCAAGGGGAGCAAGTACTGGAGGTTCGACAATGGAGTCTTGGATGAAGATTTCCCAAGAGATATCTCTGTTGGATTTGAAAAAATCCCAGATCACTTAGATGCTGCCTTTGCTATCCCTGCTCACAACCACAATGGCAAAGAGAAGGTCTACTTCTTTAAAGGTGACCGTTATTATCAGTATGAGTTTAAGCACCAGCCGTCCCATGAGGAGTGCATTCAGATGTCCAGGATCTTCCCCTCTGCGCTCTTCAGAAGatatacagatttatattatgATCGCTGGGCAGAGCACTTCAGCCAGCTCTTCAGTGGATTTGAAAGCCAACATGACACTaatcatttcattaataaagaCTGGATTGGTATCAAATCGCCAGTGGATGCAGTGCTGGCTGGAAGACTGTATGTCTCACCTAGACATTTACAACGGCCCAGTAGGAGGCGGCAGGATCAACTGGGAGGTCAACATCGGAGTCAACAATGGAACCAACAGCTGATCCAACAGTGGAACCAACACTGGAACCAACAGGGAGACAAACAATGGAACCAAGACTGGAACCAACAGTGGGACCAGCAGTGGAACCAGCAGCAGTGGAGCTCGCACCGTAGACAGAACCGATCTCCTTTCTGGGACACTATGGCTGAGAGAGGTGTAAGTATCAGGCAGGAATTTAGCCAGAGGTTTGGCCAGGACAACTGGAGAGATCAGGACAAACGTAGGAATGGTTATCAACAGCAGTATGACAAGGATTATGACTACAGATACAACCCTTCTGAGGATGCAATATTCAACCGAATTCGCTGGAGCCGGCCACTACAGAGTGTCTACTTCTTTAAAGGAGATCAGTACTACAGATTCAATTTACAGACCAAGAGAGTCGACTATGCCATTCCTTCGTACCCCAGACCGATAGGCAAATACTGGCTGGGCTGCAGAGACAGACCAGGAGCAGAGAAGAGATAAGTCTATGGATGTAGTTCAACAGATCTTGTACTTAGTGCCTGAGACGATAAATATGTACCATTTTATAACATGTAATTAATGTAAAGCATAGCATATTTTGTAGAACATCATCAGTACAATTTCACTAAGTAAGTCACCAATTTCTAAATCCAAGTTTAACTAATTCATATGCAATTTTTTGTAGAGTTATCATAAAAAATGGAACAGAATTGTTCAAATTCTGATCACACATGGTGTAAAAAGGTCAAACTGTATTCATAGTTAATCTCTACTAATATATTAGAAGTGCTGTAAATATGTTTGTCCAtctgtgaatatgaatatggttctgtgatttgcagtgaaatattcatttcatttaacctGGTGAGAGAATCATTTGTCAATAATCACTTTGGCTCTGTAGTAAAGTCACTTAaagattaaatgattaaaataataaaaccaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268928 lncRNA downstream 21799 16358336 ~ 16438387 (-) False G227210
TU268929 lncRNA downstream 21799 16437540 ~ 16438387 (-) True G227210
TU268925 lncRNA downstream 142264 16317697 ~ 16317922 (-) True G227207
TU268677 lncRNA downstream 333384 16119297 ~ 16126802 (-) True G226991
TU268688 lncRNA downstream 353820 16103733 ~ 16106366 (-) True G227002
TU268978 lncRNA upstream 68905 16534773 ~ 16535241 (-) True G227256
TU268985 lncRNA upstream 74987 16540855 ~ 16541061 (-) True G227263
TU269003 lncRNA upstream 90817 16556685 ~ 16556899 (-) True G227281
TU269008 lncRNA upstream 95137 16561005 ~ 16561214 (-) True G227286
TU269010 lncRNA upstream 97620 16563488 ~ 16563694 (-) True G227288
XM_026934696.2 mRNA downstream 43812 16366194 ~ 16416374 (-) False myo1cb
XM_026934698.2 mRNA downstream 47790 16366194 ~ 16412396 (-) False myo1cb
XM_034310540.1 mRNA downstream 47790 16366194 ~ 16412396 (-) True myo1cb
XM_026934697.2 mRNA downstream 63929 16366194 ~ 16396257 (-) False myo1cb
XM_034310541.1 mRNA downstream 64654 16366194 ~ 16395532 (-) False myo1cb
XM_026934603.2 mRNA upstream 9067 16474935 ~ 16479645 (-) True slc46a1
XM_026934605.2 mRNA upstream 9628 16475496 ~ 16479647 (-) False slc46a1
XM_026935154.2 mRNA upstream 35696 16501564 ~ 16518551 (-) True unc119a
XM_026934888.2 mRNA upstream 55022 16520890 ~ 16524642 (-) True crybb1l3
XM_026935156.2 mRNA upstream 387311 16853179 ~ 16857519 (-) True tspan13a
TU268927 other downstream 95882 16363381 ~ 16364304 (-) False si:dkey-118k5.3
TU268923 other downstream 142841 16316651 ~ 16317345 (-) True G227205
TU268676 other downstream 295150 16119297 ~ 16165036 (-) False G226991
TU268481 other downstream 615403 15812389 ~ 15844783 (-) True G226830
TU267049 other downstream 3091336 13367763 ~ 13368850 (-) True G225622
XR_003403925.1 other upstream 2748891 19214759 ~ 19214923 (-) True LOC113539409
TU270720 other upstream 3242447 19708315 ~ 19708841 (-) True G228758
trnae-cuc_28 other upstream 4885375 21351243 ~ 21351314 (-) True trnae-cuc_28
XR_004579494.1 other upstream 5285267 21751135 ~ 21811084 (-) True gdpd5b
XR_004579495.1 other upstream 5285267 21751135 ~ 21811083 (-) False gdpd5b

Expression Profile